Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1037 ATGGGTGACGATGAACATGAGCAGCCACCGTCGTCGGTGCCGCCGCCGTCGTCGAAATCTAAAGCTTTTCCGTTGCGGCCCACTATTAATCTGCCGCCACGGACCTCTATGGAGTCGCTCTTCAGCGGTGGGCCGGGTTTGGGACTCGGGTTTAGCCCCGGGCCCATGACTCTCGTCTCGAGCTTCTTTTCCGATTCAGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCGTCGCCGGTGGCTGTTCCTACGCCGGCGTCTGAGCTCAAGGCCCCTGCCGGTCTGCTCGATTCTCCGGGGCTTTTTTCGCCTGGTCAGGCTTTGGCTCAGGTTACTATGCAGGCTGCACAAGCCTATTCTCATAAGCAAATACAAGAAGAATCTTTTTCTTCATCACTAGAACGCTCTGCATCCTCCTCAAAGCTTTTGACAACCTTTCCGGGTGAGAAGTCTAAAGATCAGCCGGTGCCACTTCCATTGCTGAACTCTGCAGTTGCATCCAAGGAATCATCGGATATCTCTCAATCAGATCAGAGATTGCAATCTTCTTCGAGTAATGTTGATAGGCCTGCTGACGACGGCTACAATTGGAGAAAATATGGACAGAAACAAGTGAAAGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGCACCCAAATTGTCCCGTCAAGAAAAAGGTTGAACGATCTCTGGAAGGCCAAGTCACTGAAATTATCTACAAGGGTGAGCATAACCACGAACGACCTCAACCGAACAAGCGGGCAAAGGATGTTGGAAATTCTAACGGATATTCAAGTATTCATGGAAATCCTATGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTGAATGAGCAGACAGCTGTGTCTTCCATAGCAAAGAAGGATCAAGAATTGAGTCATGTTACACATGAACAGTTGTTGGGTATTAGTGATGGTGAGGGAGGGGGTGAGATAGAAACGGGAGTGAATCGAAAAGATGAAGACGAACCTGACGCCAAGAGACAGAATACTGAGGTTAGAGTTTCTGAGCCAGCATCTTCTCATAGGACGCTCACAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTCGATCTATTGGATGATGGCTACAGGTGGCGAAAGTATGGGCAGAAAACGGTTAAAGGAAACCCTTACCCCAGGAGCTATTATAAATGCACGACTCCGGGATGCAATGTCCGTAAACATGTTGAGAGAGCTTCGACAGACCAGAAAGCTGTCATAACGACGTATGAGGGTAAACACAATCATGATGTTCCAGCTGGTAAAATCAGCAGCCACAGTACAGTCAACAGTAACGTTCCTCAGCTAAAATCACAAAATATTGCTACTGAGAAAAAAGTTTCAAGTAACAACACTGATCCTGGGAACTCTCGTCAACAGCCCGTTGGACTTCTACGGTTAAAGAAAGAACAGATAATATAG 1470 47.28 MGDDEHEQPPSSVPPPSSKSKAFPLRPTINLPPRTSMESLFSGGPGLGLGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAVPTPASELKAPAGLLDSPGLFSPGQALAQVTMQAAQAYSHKQIQEESFSSSLERSASSSKLLTTFPGEKSKDQPVPLPLLNSAVASKESSDISQSDQRLQSSSSNVDRPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGEHNHERPQPNKRAKDVGNSNGYSSIHGNPMLSSQVQSGYLNKLNEQTAVSSIAKKDQELSHVTHEQLLGISDGEGGGEIETGVNRKDEDEPDAKRQNTEVRVSEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKTVKGNPYPRSYYKCTTPGCNVRKHVERASTDQKAVITTYEGKHNHDVPAGKISSHSTVNSNVPQLKSQNIATEKKVSSNNTDPGNSRQQPVGLLRLKKEQII 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9248866 9253500 + Tan0006913.2 Tan04g1037 749441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1037 489 ProSiteProfiles WRKY domain profile. 196 254 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1037 489 SUPERFAMILY WRKY DNA-binding domain 367 435 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1037 489 Gene3D WRKY domain 179 255 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1037 489 Gene3D WRKY domain 360 436 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1037 489 MobiDBLite consensus disorder prediction 168 194 - -
Tan04g1037 489 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 127 459 IPR044810 GO:0003700(InterPro)
Tan04g1037 489 MobiDBLite consensus disorder prediction 326 346 - -
Tan04g1037 489 ProSiteProfiles WRKY domain profile. 370 435 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1037 489 MobiDBLite consensus disorder prediction 245 259 - -
Tan04g1037 489 MobiDBLite consensus disorder prediction 144 206 - -
Tan04g1037 489 SUPERFAMILY WRKY DNA-binding domain 194 254 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1037 489 SMART WRKY_cls 375 434 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1037 489 SMART WRKY_cls 195 253 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1037 489 MobiDBLite consensus disorder prediction 313 355 - -
Tan04g1037 489 FunFam WRKY transcription factor 33 362 428 - -
Tan04g1037 489 FunFam WRKY transcription factor 183 255 - -
Tan04g1037 489 Pfam WRKY DNA -binding domain 196 252 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1037 489 Pfam WRKY DNA -binding domain 376 433 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1037 489 MobiDBLite consensus disorder prediction 245 277 - -
Tan04g1037 489 MobiDBLite consensus disorder prediction 1 28 - -
Tan04g1037 489 MobiDBLite consensus disorder prediction 260 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1037 Tan-Chr4:9248866 Tan11g0459 Tan-Chr11:3714800 3.40E-91 dispersed
Tan04g1036 Tan-Chr4:9248866 Tan04g1037 Tan-Chr4:9248866 1.60E-274 tandem
Tan04g1037 Tan-Chr4:9248866 Tan04g1038 Tan-Chr4:9248866 1.90E-187 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27215 PF03106 WRKY 3.20E-25 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1037 - - - 0.0