Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1038 ATGGGTGACGATGAACATGAGCAGCCACCGTCGTCGGTGCCGCCGCCGTCGTCGAAATCTAAAGCTTTTCCGTTGCGGCCCACTATTAATCTGCCGCCACGGACCTCTATGGAGTCGCTCTTCAGCGGTGGGCCGGGTTTGGGACTCGGGTTTAGCCCCGGGCCCATGACTCTCGTCTCGAGCTTCTTTTCCGATTCAGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCGTCGCCGGTGGCTGTTCCTACGCCGGCGTCTGAGCTCAAGGCCCCTGCCGGTCTGCTCGATTCTCCGGGGCTTTTTTCGCCTGGTCAGGGACCTTTTGGAATGACACATCAGCAGGCTTTGGCTCAGGTTACTATGCAGGCTGCACAAGCCTATTCTCATAAGCAAATACAAGAAGAATCTTTTTCTTCATCACTAGAACGCTCTGCATCCTCCTCAAAGCTTTTGACAACCTTTCCGGGTGAGAAGTCTAAAGATCAGCCGGTGCCACTTCCATTGCTGAACTCTGCAGTTGCATCCAAGGAATCATCGGATATCTCTCAATCAGATCAGAGATTGCAATCTTCTTCGAGTAATGTTGATAGGCCTGCTGACGACGGCTACAATTGGAGAAAATATGGACAGAAACAAGTGAAAGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGCACCCAAATTGTCCCGTCAAGAAAAAGGTTGAACGATCTCTGGAAGGCCAAGTCACTGAAATTATCTACAAGGGTGAGCATAACCACGAACGACCTCAACCGAACAAGCGGGCAAAGGATGTTGGAAATTCTAACGGATATTCAAGTATTCATGGAAATCCTATGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTGAATGAGCAGACAGCTGTGTCTTCCATAGCAAAGAAGGATCAAGAATTGAGTCATGTTACACATGAACAGTTGTTGGGTATTAGTGATGGTGAGGGAGGGGGTGAGATAGAAACGGGAGTGAATCGAAAAGATGAAGACGAACCTGACGCCAAGAGACAGTAA 1059 48.91 MGDDEHEQPPSSVPPPSSKSKAFPLRPTINLPPRTSMESLFSGGPGLGLGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAVPTPASELKAPAGLLDSPGLFSPGQGPFGMTHQQALAQVTMQAAQAYSHKQIQEESFSSSLERSASSSKLLTTFPGEKSKDQPVPLPLLNSAVASKESSDISQSDQRLQSSSSNVDRPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGEHNHERPQPNKRAKDVGNSNGYSSIHGNPMLSSQVQSGYLNKLNEQTAVSSIAKKDQELSHVTHEQLLGISDGEGGGEIETGVNRKDEDEPDAKRQ 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9248866 9253500 + Tan0006913.3 Tan04g1038 749442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1038 352 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 10 310 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Tan04g1038 352 ProSiteProfiles WRKY domain profile. 205 263 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1038 352 SMART WRKY_cls 204 262 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1038 352 MobiDBLite consensus disorder prediction 1 29 - -
Tan04g1038 352 MobiDBLite consensus disorder prediction 310 352 - -
Tan04g1038 352 MobiDBLite consensus disorder prediction 177 203 - -
Tan04g1038 352 Gene3D WRKY domain 188 264 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1038 352 Pfam WRKY DNA -binding domain 205 261 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1038 352 SUPERFAMILY WRKY DNA-binding domain 203 263 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1038 352 MobiDBLite consensus disorder prediction 254 268 - -
Tan04g1038 352 MobiDBLite consensus disorder prediction 335 352 - -
Tan04g1038 352 MobiDBLite consensus disorder prediction 254 294 - -
Tan04g1038 352 FunFam WRKY transcription factor 192 264 - -
Tan04g1038 352 MobiDBLite consensus disorder prediction 153 215 - -
Tan04g1038 352 MobiDBLite consensus disorder prediction 269 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1036 Tan-Chr4:9248866 Tan04g1038 Tan-Chr4:9248866 1.10E-195 dispersed
Tan04g1038 Tan-Chr4:9248866 Tan11g0469 Tan-Chr11:3856132 2.20E-68 dispersed
Tan04g1037 Tan-Chr4:9248866 Tan04g1038 Tan-Chr4:9248866 1.90E-187 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27216 PF03106 WRKY 1.10E-26 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1038 - - - 0.0