Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1048 ATGAGCTTCGAACCTTCCGGAAGTGCCGCCGGTTTGCCGGCGCCGGGGAGCTCAGGAGGTAGGAGAAACTCCTCGTCGTCATCGGCATCGGGGACGAGCAAGGAGAAGCAAAAGGAGAAAGCGAGAGTGAGTAGAACGTCACTGATATTGTGGCACGCTCACCAAAATGACTCTACTGCTGTTCGCAAGCTTCTGGAGGAGGATCAGTCCCTTGTCCATGCCAGAGATTACGACAGCCGCACCCCTCTCCACGTTGCATCGCTTCATGGCTGGATCGACGTTGCCAAGTGTTTGATTGAACACGGTGCTGATGTTAATTCCCAAGATCGCTGGAAGAACACTCCGCTAGCTGATGCGGAAGGAGCTAAAAAGCATGGCATGATTGAGTTATTAAAATCGTACGGTGGCCTTTCCTATGGACAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCTCCTCCTCTGCCAAATAAATGTGACTGGGAAATTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATTATTGGCAAGGGGTCCTTCGGGGAAATTTTGAAGGCCTATTGGCGTGGAACCCCTGTAGCTGTCAAACGTATTCTTCCATCACTTTCTGATGATAGACTTGTGATTCAGGACTTCCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCAAACATAGTCCAATTTCTTGGGGCCGTCACTGAGAAGAAACCACTCATGTTAATCACTGAATACTTGAGAGGGGGTGATCTTCACCAGTACCTCAAGGATAAAGGTTCACTCAGTCCTGCAACGGCCATCAATTTTGCACTGGACATTGCCAGGGGAATGGCTTATCTCCACAATGAGCCAAATGTTATTATTCACCGTGACCTAAAACCAAGGAATGTTCTTTTAGTTAATTCCGGAGCCGACCATCTAAAAGTTGGTGATTTTGGTCTAAGCAAGCTCATCAAGGTTCAGAATTCACATGATGTTTACAAAATGACTGGCGAGACTGGGAGCTACCGGTATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAGGTGGACGTGTTTTCTTTTGCCATGATATTATATGAGATGCTTGAGGGAGATCCTCCACTGGCAAATTATGAGCCTTATGAAGCTGCCAAATACGTGGCTGAAGGTCATAGACCGATGTTCCGTGCAAAAGGATACCTTCCCATTCTAAGAGAGTTAACAGACGAATGTTGGGCTGGTGATATGAACAAGAGACCTTCTTTCTTGGAAATTCTCAAAAGACTTGAAAAGGTCAAGGAAAATCTACCCACTGATCATTCCTGGAATTTGTTTAATGCATAA 1341 45.79 MSFEPSGSAAGLPAPGSSGGRRNSSSSSASGTSKEKQKEKARVSRTSLILWHAHQNDSTAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIDVAKCLIEHGADVNSQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPMFRAKGYLPILRELTDECWAGDMNKRPSFLEILKRLEKVKENLPTDHSWNLFNA 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9327838 9334723 + Tan0019503.1 Tan04g1048 749452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1048 446 FunFam serine/threonine-protein kinase STY8 23 144 - -
Tan04g1048 446 Pfam Ankyrin repeats (3 copies) 52 133 IPR002110 GO:0005515(InterPro)
Tan04g1048 446 Gene3D - 18 144 IPR036770 -
Tan04g1048 446 Gene3D Transferase(Phosphotransferase) domain 1 250 442 - -
Tan04g1048 446 PANTHER SERINE-THREONINE PROTEIN KINASE 23 431 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Tan04g1048 446 ProSitePatterns Protein kinases ATP-binding region signature. 176 197 IPR017441 GO:0005524(InterPro)
Tan04g1048 446 PIRSF ILK 9 446 - -
Tan04g1048 446 CDD STKc_MAP3K-like 176 428 - -
Tan04g1048 446 MobiDBLite consensus disorder prediction 18 32 - -
Tan04g1048 446 FunFam serine/threonine-protein kinase STY46-like 163 249 - -
Tan04g1048 446 SMART serkin_6 170 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1048 446 ProSiteProfiles Protein kinase domain profile. 170 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1048 446 SUPERFAMILY Protein kinase-like (PK-like) 168 440 IPR011009 -
Tan04g1048 446 MobiDBLite consensus disorder prediction 1 43 - -
Tan04g1048 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g1048 446 SMART ANK_2a 78 107 IPR002110 GO:0005515(InterPro)
Tan04g1048 446 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515(InterPro)
Tan04g1048 446 Gene3D Phosphorylase Kinase; domain 1 155 249 - -
Tan04g1048 446 SUPERFAMILY Ankyrin repeat 49 136 IPR036770 -
Tan04g1048 446 FunFam Integrin-linked protein kinase family 249 444 - -
Tan04g1048 446 ProSiteProfiles Ankyrin repeat region circular profile. 78 110 - -
Tan04g1048 446 Pfam Protein tyrosine and serine/threonine kinase 174 428 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1048 Tan-Chr4:9327838 Tan05g2543 Tan-Chr5:76764397 1.20E-84 dispersed
Tan11g1376 Tan-Chr11:12056734 Tan04g1048 Tan-Chr4:9327838 4.60E-08 dispersed
Tan01g3462 Tan-Chr1:99935321 Tan04g1048 Tan-Chr4:9327838 8.10E-36 transposed
Tan04g1048 Tan-Chr4:9327838 Tan05g3305 Tan-Chr5:84958429 4.10E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67447 PF07714 PK_Tyr_Ser-Thr 3.50E-63 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1048 - - - 0.0