Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1065 ATGGCTTCTGTCCTTTTCTTTTTGGCTGGTTTCTATGCCATAGTTTTCTCTGTTGATGCCTATGCAGGTGGAGGGTGGACTGGCGCTCATGCCACGTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGAAACTTATACAGTCAAGGCTATGGAACAAACACTGCTGCTCTGAGTACGGCTCTGTTCAACAATGGGTTGAGCTGTGGGTCTTGCTATGAGATTAGGTGCACCAGTGACCCTAAATGGTGCCTGCCAGGCTCCATTATGGTCACAGCCACTAATTTCTGCCCTCCAAACAATGCCCTCCCCAACAACGCTGGAGGCTGGTGCAACCCTCCATTGCAGCACTTTGATCTCTCTCAGCCTGTCTTCCAACACATTGCTCAGTACAGAGCAGGAATTGTGCCTGTCGCCTACAGAAGGGTACCCTGCAGAAGAAGGGGAGGCATAAGGTTCACCATCAATGGTCATTCCTACTTCAACCTGGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACATGCAGTTTCCATCAAAGGTTCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAACTGGCAGAGCAACAGCTATCTCAATGGCCAAAGCCTCTCCTTCAAGGTCACCACCAGCGACGGCCGTACAGTCATCTCCAACAACGTTGTCCCAGCCGGCTGGTCCTTTGGCCAGACTTACAGTGGTGCTCAATTCTGA 747 51.41 MASVLFFLAGFYAIVFSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCTSDPKWCLPGSIMVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNVVPAGWSFGQTYSGAQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9555230 9556976 + Tan0002467.1 Tan04g1065 749469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1065 248 SMART dpbb_1 61 146 IPR007112 -
Tan04g1065 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Tan04g1065 248 CDD DPBB_EXPA_N 25 151 - -
Tan04g1065 248 PANTHER EXPANSIN-A15 11 248 IPR002963 GO:0009664(InterPro)
Tan04g1065 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Tan04g1065 248 Gene3D - 14 152 IPR036908 -
Tan04g1065 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Tan04g1065 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576(InterPro)
Tan04g1065 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Tan04g1065 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Tan04g1065 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576(InterPro)
Tan04g1065 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Tan04g1065 248 FunFam Expansin 15 152 - -
Tan04g1065 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Tan04g1065 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664(InterPro)
Tan04g1065 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664(InterPro)
Tan04g1065 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664(InterPro)
Tan04g1065 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Tan04g1065 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664(InterPro)
Tan04g1065 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664(InterPro)
Tan04g1065 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664(InterPro)
Tan04g1065 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664(InterPro)
Tan04g1065 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
Tan04g1065 248 Gene3D - 156 248 IPR036749 -
Tan04g1065 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Tan04g1065 248 FunFam Expansin 156 248 - -
Tan04g1065 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Tan04g1065 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1456 Tan-Chr2:57925973 Tan04g1065 Tan-Chr4:9555230 1.60E-122 dispersed
Tan04g1065 Tan-Chr4:9555230 Tan09g2109 Tan-Chr9:71460094 1.50E-116 dispersed
Tan02g2829 Tan-Chr2:96574006 Tan04g1065 Tan-Chr4:9555230 3.40E-95 transposed
Tan11g0502 Tan-Chr11:4239859 Tan04g1065 Tan-Chr4:9555230 6.00E-110 wgd
Tan04g1065 Tan-Chr4:9555230 Tan05g2430 Tan-Chr5:75460904 3.00E-96 wgd
Tan04g1065 Tan-Chr4:9555230 Tan09g2108 Tan-Chr9:71460094 1.50E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1065 - - - 0.0