Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1081 ATGGTCATTTCTTACGGAGAATGTCTCAAGAATCACGCCGCCACTGTCGGCGGCCACGCCCTCGACGGCTGCGGTGAGTTTATGCCGTCCATCACCACCACACCCTCCGATCCCACCTCTCTCAATTGCGCTGCTTGTGGCTGCCACCGCAACTTCCACCGCCGTGAACCGGATGATCCCTGGCCGAATCTCGCCACCCACCGTCGTTACCACCCATATCGCCTCTGCGCGCCGCCGTCGCCGAGCTCGAGCCCAGTCAAGCCCCAAACCCCATCTTCACCGATCCCTCTGCCAATTTCGCACATCCCACCACCACTCCACTTCTCCGCCCCCCACATGTTGCTGGCATTGAGCACCGGAGCGCCGCCCGACGACCACCGTGCCGGCCGGTTCAGCCCGAAAGAGAGGAAGAGAAAGAGGACCAAATTCAGCGGGGATCAAAAGGAAAAGATGCAATCTTTCTCAGAAAAAATGGGGTGGAAGATTCGAAAAAGTGACGAAAGGTTAGTGGAGGAATTCTGCAACGAAATTGGAATCGGAAAACGGGTGCTGAGAGTTTGGATGCATAATAACAAATACACTGGAGGAAAAGCAGAGAAAAACAGAGCTTCTCAGAGTAGCGAAAATGGCGGAAATGACTCAAAAGAGAGTACATAA 657 54.64 MVISYGECLKNHAATVGGHALDGCGEFMPSITTTPSDPTSLNCAACGCHRNFHRREPDDPWPNLATHRRYHPYRLCAPPSPSSSPVKPQTPSSPIPLPISHIPPPLHFSAPHMLLALSTGAPPDDHRAGRFSPKERKRKRTKFSGDQKEKMQSFSEKMGWKIRKSDERLVEEFCNEIGIGKRVLRVWMHNNKYTGGKAEKNRASQSSENGGNDSKEST 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9709979 9711077 + Tan0010060.1 Tan04g1081 749485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1081 218 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Tan04g1081 218 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 194 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan04g1081 218 MobiDBLite consensus disorder prediction 139 156 - -
Tan04g1081 218 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
Tan04g1081 218 SUPERFAMILY Homeodomain-like 125 197 IPR009057 -
Tan04g1081 218 ProSiteProfiles 'Homeobox' domain profile. 134 198 IPR001356 GO:0003677(InterPro)
Tan04g1081 218 Pfam ZF-HD protein dimerisation region 3 57 IPR006456 -
Tan04g1081 218 Gene3D - 123 197 - -
Tan04g1081 218 MobiDBLite consensus disorder prediction 197 218 - -
Tan04g1081 218 NCBIfam homeobox domain, ZF-HD class 136 193 IPR006455 -
Tan04g1081 218 MobiDBLite consensus disorder prediction 119 156 - -
Tan04g1081 218 MobiDBLite consensus disorder prediction 193 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1081 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1081 Tan-Chr4:9709979 Tan07g1215 Tan-Chr7:49924779 4.70E-45 dispersed
Tan11g0514 Tan-Chr11:4353834 Tan04g1081 Tan-Chr4:9709979 2.60E-52 wgd
Tan04g1081 Tan-Chr4:9709979 Tan05g2442 Tan-Chr5:75562217 1.10E-14 wgd
Tan04g1081 Tan-Chr4:9709979 Tan09g2126 Tan-Chr9:71530229 6.60E-15 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g2444 . 58 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.1e-45 178.7
Tan01g1432 . 54 234 ZF-HD Transcription Factor Family AT5G65410 56.4 8.7e-44 174.9
Tan02g2444 . 1 241 ZF-HD Transcription Factor Family AT4G24660 51.7 1.2e-54 210.7
Tan02g1974 . 64 287 ZF-HD Transcription Factor Family AT4G24660 51.3 8.8e-50 194.5
Tan11g2213 . 84 287 ZF-HD Transcription Factor Family AT2G02540 53.2 1.5e-52 204.1
Tan11g2213 . 84 290 ZF-HD Transcription Factor Family AT1G14440 56.6 1.2e-57 221.1
Tan01g1242 . 65 237 ZF-HD Transcription Factor Family AT2G18350 51.3 1.3e-44 177.6
Tan11g0514 . 17 269 ZF-HD Transcription Factor Family AT5G15210 56.5 8.5e-52 201.4
Tan07g1215 . 22 269 ZF-HD Transcription Factor Family AT5G15210 56.2 1.0e-49 194.5
Tan11g0514 . 10 271 ZF-HD Transcription Factor Family AT3G28920 60.0 4.0e-61 232.6
Tan07g1215 . 22 263 ZF-HD Transcription Factor Family AT3G28920 65.5 8.2e-59 224.9
Tan11g0514 . 12 275 ZF-HD Transcription Factor Family AT5G39760 53.7 4.0e-51 199.5
Tan07g1215 . 30 261 ZF-HD Transcription Factor Family AT5G39760 60.2 8.3e-49 191.8
Tan11g0514 . 73 272 ZF-HD Transcription Factor Family AT1G69600 50.7 1.5e-47 187.2
Tan04g1081 . 1 194 ZF-HD Transcription Factor Family AT1G69600 52.9 2.1e-46 183.3
Tan11g2213 . 84 287 ZF-HD Transcription Factor Family AT2G02540 53.2 1.5e-52 204.1
Tan02g2444 . 1 241 ZF-HD Transcription Factor Family AT4G24660 51.7 1.2e-54 210.7
Tan02g1974 . 64 287 ZF-HD Transcription Factor Family AT4G24660 51.3 8.8e-50 194.5
Tan11g0514 . 12 275 ZF-HD Transcription Factor Family AT5G39760 53.7 4.0e-51 199.5
Tan07g1215 . 30 261 ZF-HD Transcription Factor Family AT5G39760 60.2 8.3e-49 191.8
Tan01g1242 . 65 237 ZF-HD Transcription Factor Family AT2G18350 51.3 1.3e-44 177.6
Tan02g2444 . 58 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.1e-45 178.7
Tan01g1432 . 54 234 ZF-HD Transcription Factor Family AT5G65410 56.4 8.7e-44 174.9
Tan11g0514 . 73 272 ZF-HD Transcription Factor Family AT1G69600 50.7 1.5e-47 187.2
Tan04g1081 . 1 194 ZF-HD Transcription Factor Family AT1G69600 52.9 2.1e-46 183.3
Tan11g0514 . 17 269 ZF-HD Transcription Factor Family AT5G15210 56.5 8.5e-52 201.4
Tan07g1215 . 22 269 ZF-HD Transcription Factor Family AT5G15210 56.2 1.0e-49 194.5
Tan11g2213 . 84 290 ZF-HD Transcription Factor Family AT1G14440 56.6 1.2e-57 221.1
Tan11g0514 . 10 271 ZF-HD Transcription Factor Family AT3G28920 60.0 4.0e-61 232.6
Tan07g1215 . 22 263 ZF-HD Transcription Factor Family AT3G28920 65.5 8.2e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013584 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27224 PF04770 ZF-HD_dimer 3.30E-28 No_clan Tan TF