Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g1081 | ATGGTCATTTCTTACGGAGAATGTCTCAAGAATCACGCCGCCACTGTCGGCGGCCACGCCCTCGACGGCTGCGGTGAGTTTATGCCGTCCATCACCACCACACCCTCCGATCCCACCTCTCTCAATTGCGCTGCTTGTGGCTGCCACCGCAACTTCCACCGCCGTGAACCGGATGATCCCTGGCCGAATCTCGCCACCCACCGTCGTTACCACCCATATCGCCTCTGCGCGCCGCCGTCGCCGAGCTCGAGCCCAGTCAAGCCCCAAACCCCATCTTCACCGATCCCTCTGCCAATTTCGCACATCCCACCACCACTCCACTTCTCCGCCCCCCACATGTTGCTGGCATTGAGCACCGGAGCGCCGCCCGACGACCACCGTGCCGGCCGGTTCAGCCCGAAAGAGAGGAAGAGAAAGAGGACCAAATTCAGCGGGGATCAAAAGGAAAAGATGCAATCTTTCTCAGAAAAAATGGGGTGGAAGATTCGAAAAAGTGACGAAAGGTTAGTGGAGGAATTCTGCAACGAAATTGGAATCGGAAAACGGGTGCTGAGAGTTTGGATGCATAATAACAAATACACTGGAGGAAAAGCAGAGAAAAACAGAGCTTCTCAGAGTAGCGAAAATGGCGGAAATGACTCAAAAGAGAGTACATAA | 657 | 54.64 | MVISYGECLKNHAATVGGHALDGCGEFMPSITTTPSDPTSLNCAACGCHRNFHRREPDDPWPNLATHRRYHPYRLCAPPSPSSSPVKPQTPSSPIPLPISHIPPPLHFSAPHMLLALSTGAPPDDHRAGRFSPKERKRKRTKFSGDQKEKMQSFSEKMGWKIRKSDERLVEEFCNEIGIGKRVLRVWMHNNKYTGGKAEKNRASQSSENGGNDSKEST | 218 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 9709979 | 9711077 | + | Tan0010060.1 | Tan04g1081 | 749485 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g1081 | 218 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 5 | 56 | IPR006456 | - | |
Tan04g1081 | 218 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 3 | 194 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Tan04g1081 | 218 | MobiDBLite | consensus disorder prediction | 139 | 156 | - | - | |
Tan04g1081 | 218 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 5 | 56 | IPR006456 | - | |
Tan04g1081 | 218 | SUPERFAMILY | Homeodomain-like | 125 | 197 | IPR009057 | - | |
Tan04g1081 | 218 | ProSiteProfiles | 'Homeobox' domain profile. | 134 | 198 | IPR001356 | GO:0003677(InterPro) | |
Tan04g1081 | 218 | Pfam | ZF-HD protein dimerisation region | 3 | 57 | IPR006456 | - | |
Tan04g1081 | 218 | Gene3D | - | 123 | 197 | - | - | |
Tan04g1081 | 218 | MobiDBLite | consensus disorder prediction | 197 | 218 | - | - | |
Tan04g1081 | 218 | NCBIfam | homeobox domain, ZF-HD class | 136 | 193 | IPR006455 | - | |
Tan04g1081 | 218 | MobiDBLite | consensus disorder prediction | 119 | 156 | - | - | |
Tan04g1081 | 218 | MobiDBLite | consensus disorder prediction | 193 | 218 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g1081 | Tan-Chr4:9709979 | Tan07g1215 | Tan-Chr7:49924779 | 4.70E-45 | dispersed | |
Tan11g0514 | Tan-Chr11:4353834 | Tan04g1081 | Tan-Chr4:9709979 | 2.60E-52 | wgd | |
Tan04g1081 | Tan-Chr4:9709979 | Tan05g2442 | Tan-Chr5:75562217 | 1.10E-14 | wgd | |
Tan04g1081 | Tan-Chr4:9709979 | Tan09g2126 | Tan-Chr9:71530229 | 6.60E-15 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27224 | PF04770 | ZF-HD_dimer | 3.30E-28 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g1081 | - | - | - | 0.0 |