Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1081 ATGGTCATTTCTTACGGAGAATGTCTCAAGAATCACGCCGCCACTGTCGGCGGCCACGCCCTCGACGGCTGCGGTGAGTTTATGCCGTCCATCACCACCACACCCTCCGATCCCACCTCTCTCAATTGCGCTGCTTGTGGCTGCCACCGCAACTTCCACCGCCGTGAACCGGATGATCCCTGGCCGAATCTCGCCACCCACCGTCGTTACCACCCATATCGCCTCTGCGCGCCGCCGTCGCCGAGCTCGAGCCCAGTCAAGCCCCAAACCCCATCTTCACCGATCCCTCTGCCAATTTCGCACATCCCACCACCACTCCACTTCTCCGCCCCCCACATGTTGCTGGCATTGAGCACCGGAGCGCCGCCCGACGACCACCGTGCCGGCCGGTTCAGCCCGAAAGAGAGGAAGAGAAAGAGGACCAAATTCAGCGGGGATCAAAAGGAAAAGATGCAATCTTTCTCAGAAAAAATGGGGTGGAAGATTCGAAAAAGTGACGAAAGGTTAGTGGAGGAATTCTGCAACGAAATTGGAATCGGAAAACGGGTGCTGAGAGTTTGGATGCATAATAACAAATACACTGGAGGAAAAGCAGAGAAAAACAGAGCTTCTCAGAGTAGCGAAAATGGCGGAAATGACTCAAAAGAGAGTACATAA 657 54.64 MVISYGECLKNHAATVGGHALDGCGEFMPSITTTPSDPTSLNCAACGCHRNFHRREPDDPWPNLATHRRYHPYRLCAPPSPSSSPVKPQTPSSPIPLPISHIPPPLHFSAPHMLLALSTGAPPDDHRAGRFSPKERKRKRTKFSGDQKEKMQSFSEKMGWKIRKSDERLVEEFCNEIGIGKRVLRVWMHNNKYTGGKAEKNRASQSSENGGNDSKEST 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9709979 9711077 + Tan0010060.1 Tan04g1081 749485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1081 218 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Tan04g1081 218 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 194 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan04g1081 218 MobiDBLite consensus disorder prediction 139 156 - -
Tan04g1081 218 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
Tan04g1081 218 SUPERFAMILY Homeodomain-like 125 197 IPR009057 -
Tan04g1081 218 ProSiteProfiles 'Homeobox' domain profile. 134 198 IPR001356 GO:0003677(InterPro)
Tan04g1081 218 Pfam ZF-HD protein dimerisation region 3 57 IPR006456 -
Tan04g1081 218 Gene3D - 123 197 - -
Tan04g1081 218 MobiDBLite consensus disorder prediction 197 218 - -
Tan04g1081 218 NCBIfam homeobox domain, ZF-HD class 136 193 IPR006455 -
Tan04g1081 218 MobiDBLite consensus disorder prediction 119 156 - -
Tan04g1081 218 MobiDBLite consensus disorder prediction 193 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1081 Tan-Chr4:9709979 Tan07g1215 Tan-Chr7:49924779 4.70E-45 dispersed
Tan11g0514 Tan-Chr11:4353834 Tan04g1081 Tan-Chr4:9709979 2.60E-52 wgd
Tan04g1081 Tan-Chr4:9709979 Tan05g2442 Tan-Chr5:75562217 1.10E-14 wgd
Tan04g1081 Tan-Chr4:9709979 Tan09g2126 Tan-Chr9:71530229 6.60E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27224 PF04770 ZF-HD_dimer 3.30E-28 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1081 - - - 0.0