Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1086 ATGAAGATTTCCTGTTCGACCACCTTCTCAACTTTAGCTGAATCTTCAATCCATTGTCTTTCTAACCCATGGAAGCCATCGTCTTCTTTGAAATCCACGGGGAAACGAACTCCTAAGATTCTATTCTTTGGTTACCGGAATTTGTCCCTGCGATTGTCACCCCGACGATCAAATTCCCTTTCCCGAAACGGGTTTCGTCCAATTTTCTTCTTCAACGCTAAAGATGAATCCGGCGGCGATTTTCAGCAAAAGGGAAATGGGGCTGGATGGCCCATCTTGAGGCGGTGGGATGTGCCATGGGGATGGCAAACTGTTTCATTAACTTCACTAGCTTGTGGATTAAGTTTCATTGTGACAGGATTGGTTGAATCTGCTGCCATACCTTATCTTGGTATTCGCATTGAAGAGCTAAGCTTAGACGAGAAGGCTGAAATACTTTTCCTGGACCAAGGCATTACAACTGTGGCAGTGCTTGGGATCTTATACAGTATTGCCAACGCTTTCCAACCACTTCCTGATGACTTGTATTGCTATGATGTGAGGGACCCTCTAAATCTGCAGAAGGGCTGGCTCTTATGGGCAGGAGTGGGTCTGGTTGGTGCCTTGGCTTCTATTGCAGGGACAGGAGCTGTCTTGTCTTCATTTAACGGTGGGAGTCCTCAAAGAGAGACAGATGCTCTAGTACGCTTGCTTCCATTAATTGGATCTTCCAGCATCAGCACTGCTTGTCTGGTGGGCATCACGGGGGTCCTTGCTCCAGTTCTTGAAGAGACTGTGTTCCGGGGATTTTTTATGGTGTCTCTTACCAAATGGGTTCCTACGCCAGTTGCCATTCTAATTAGCGCAGCTGTATTTGCCCTTGCACATCTCACTCCTGGCGAGTTTCCTCAGTTATTTGTACTTGGAACTGCTCTGGGATTTTCTTATGCTCAAACTCGCAATCTCTTGACCCCCATCACCATACATGCTTTATGGAACTCGGGCGTCATTTTGCTTCTGACCTTCCTTTCGCTCCAAGGCTACGATATCAACGAATTGCTGCAGACAACATAA 1053 46.72 MKISCSTTFSTLAESSIHCLSNPWKPSSSLKSTGKRTPKILFFGYRNLSLRLSPRRSNSLSRNGFRPIFFFNAKDESGGDFQQKGNGAGWPILRRWDVPWGWQTVSLTSLACGLSFIVTGLVESAAIPYLGIRIEELSLDEKAEILFLDQGITTVAVLGILYSIANAFQPLPDDLYCYDVRDPLNLQKGWLLWAGVGLVGALASIAGTGAVLSSFNGGSPQRETDALVRLLPLIGSSSISTACLVGITGVLAPVLEETVFRGFFMVSLTKWVPTPVAILISAAVFALAHLTPGEFPQLFVLGTALGFSYAQTRNLLTPITIHALWNSGVILLLTFLSLQGYDINELLQTT 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9727781 9731508 - Tan0017109.1 Tan04g1086 749490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1086 350 Pfam Type II CAAX prenyl endopeptidase Rce1-like 242 327 IPR003675 GO:0004222(InterPro)|GO:0016020(InterPro)|GO:0071586(InterPro)
Tan04g1086 350 PANTHER CAAX AMINO TERMINAL PROTEASE 91 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1086 K07052 - - csv:101219539 610.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0226 Tan-Chr2:1963662 Tan04g1086 Tan-Chr4:9727781 2.70E-14 dispersed
Tan04g1086 Tan-Chr4:9727781 Tan07g0966 Tan-Chr7:21886189 7.20E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g906 . . . . . . Bma14g01642 . Cmo04g01732 Cmo18g01177 . Cma18g01156 . Car18g01065 Sed01g3541 Cpe09g00174 Cpe01g01462 Bhi07g01572 Tan04g1086 Cmetu10g1335 Lac13g0313 Hepe10g1736 . . Cla05g02447 Cam05g2633 Cec05g2666 Cco05g2704 Clacu05g2636 Cmu05g2490 Cre05g2603 Cone13ag0957 . . . Lsi04g00430 Csa05g02444 Chy10g00996 Cme10g00421 . Blo11g00772 . . . . . . . . . Cma04g01654 . Car04g01694 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009356 0 1 1 2 0 1 2 1 1 1 1 1 2 1 0 3 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33