Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1101 ATGACGAGCAATGGGATGGCCTTTTTTCCGGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCATTTCTAGGAAAACGATCCATGTCATTTTCAGGGGCAGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATATTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGGCTTAACATGGAACAAGTGAAAACACTTGAAAAAAATTTCGAACTTGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTCGAGCCCTTGGTTTACAGCCAAGACAGATTGCTATTTGGTTTCAAAACAGAAGGGCTAGGTGGAAGACTAAACAACTAGAAAAAGACTACGATCTTCTCAAGAGACAATTTGAAGCTATCAAATCAGACAATGAAGCCCTCAAATCCCAGAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACAGAATCAATAAATCTGAACAAAGAAACAGAGGGGTCTTGCAGTAATAGAAGTGAAAACAGCTCTGATAACATAAAATTGGACATCTCAAGAACACCAGCCATTGATAGCCCTCATCAGCATCAGCATCAGCATCAGCATCAGCATCAACACCACCCAACAAACAGGCCTCTTTTTCCCACTTCATTAAGGCCTCCAGCTTTGGCTCAGCTCTTTCAAACCTCCTCAAGATCATCAGACCCACCAAAACAACTTGATAACAACAATCATCCTCAAATTGCTAAAGAAGAAACCAGCAGCTTATCCAATATGTTCTGTGGAATGGATGATCACTCTGGGTTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA 918 41.94 MTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEYSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSQNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHQHQHQHQHHPTNRPLFPTSLRPPALAQLFQTSSRSSDPPKQLDNNNHPQIAKEETSSLSNMFCGMDDHSGFWPWLEQQHFN 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10006310 10008578 + Tan0012049.1 Tan04g1101 749505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1101 305 SMART HOX_1 82 143 IPR001356 GO:0003677(InterPro)
Tan04g1101 305 Pfam Homeodomain 84 137 IPR001356 GO:0003677(InterPro)
Tan04g1101 305 CDD homeodomain 84 140 IPR001356 GO:0003677(InterPro)
Tan04g1101 305 Coils Coil 131 179 - -
Tan04g1101 305 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677(InterPro)
Tan04g1101 305 SUPERFAMILY Homeodomain-like 72 141 IPR009057 -
Tan04g1101 305 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677(InterPro)
Tan04g1101 305 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677(InterPro)
Tan04g1101 305 MobiDBLite consensus disorder prediction 187 209 - -
Tan04g1101 305 Pfam Homeobox associated leucine zipper 139 179 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1101 305 MobiDBLite consensus disorder prediction 180 244 - -
Tan04g1101 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 61 270 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Tan04g1101 305 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan04g1101 305 MobiDBLite consensus disorder prediction 62 84 - -
Tan04g1101 305 FunFam Homeobox-leucine zipper protein ATHB-13 76 143 - -
Tan04g1101 305 Gene3D - 76 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1101 Tan-Chr4:10006310 Tan05g2079 Tan-Chr5:71222985 2.90E-24 dispersed
Tan11g0529 Tan-Chr11:4582562 Tan04g1101 Tan-Chr4:10006310 2.10E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27227 PF00046 Homeodomain 3.10E-15 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1101 K09338 - csv:101221595 528.48