Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1114 ATGGCATCACCAACCAACAGAATAATAATCATGATTGGGCTGCTCCTAACTTTGTCATTCCTGGCTATCGCAGACGCCGACATTGTAAACTTCGATGACTACTGGAAAGCACGCGCCGCCGCGGCCCAACATGCCGCCGTTGAGGCATTTGATCCCAATCCTGAGAACGTCACCGACTCCTTCAACGCCCAAGTTGGCCAGGTATTGAGTGGAAAGAACGGCACGAGGAGGAATTTGAAGAAATACACAGGGCCATGCAGAAGCACTAATCCCATCGACAATTGCTGGAGATGCGACCCAAATTGGGCGAACAACCGGAAGAAGCTGGCGGATTGCGTTCTGGGTTTTGGGCGCAAGACCACCGGCGGGAAGTTGGGTCCATACTACGTGGTGAACGATTCGTCGGACTCGGACCTGATGAACCCAAAGCCTGGGACCCTCCGTCATGCGGTGATCCAAAAGGGGCCGCTGTGGATCACGTTCTCCACCAATATGGCCATTAGGCTGACTCAGGAGCTCATCATGACCAGCGACAAGACCATCGATGCTAGAGGGGCTAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTACATCAACAATGTCATCATCCATGGCCTTCGTATTCATCACATCGTCGTCGGTACCGGCGGAATGATCAGAGACGCCGTTGACCATGTGGGTTTGAGGACCATGAGCGACGGCGATGGCATTTCCATCTTCGGTTCCTCTAATGTTTGGATTGACCATGTTTCCATGTCCAATTGCCACGATGGCCTCATTGACGCCATTATGGGATCCACTGGTATCACCATCTCTAATAGTCACTTTACTCATCACAATGAGGTGATGTTGTTTGGAGCAAGTGATGGGTACTCAAATGATCAAATAATGCAAGTGACAGTGGCATTCAACCACTTCGGTCAGGGATTGGTGCAGAGGATGCCAAGGTGCCGATGGGGCTTCTTCCATGTCGTCAACAATGACTACACTCATTGGCTTATGTATGCCATCGGCGGTAGCCAACATCCCACCATTATCAGCCAGGGCAATCGCTTCATTGCTCCTCCCAATGTATACGCTAAAGAGGTGACGAAGAGAGAATACTCGCCGGAAAATGTGTGGAAGAGTTGGACATGGAGATCGGAGGGAGACTTGATGATGAACGGAGCATTCTTTGTTTCCTCCGGCGATCAGAGCAAGAGCAGACCCTTCTCAAGGATGGATATGATTTCATATAAACCAGGAACATATGTTACCAGAATGACACGTTTTGCAGGCGCACTTCCCTGCTTCATCGGCCGACCATGCTAA 1320 50.45 MASPTNRIIIMIGLLLTLSFLAIADADIVNFDDYWKARAAAAQHAAVEAFDPNPENVTDSFNAQVGQVLSGKNGTRRNLKKYTGPCRSTNPIDNCWRCDPNWANNRKKLADCVLGFGRKTTGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWITFSTNMAIRLTQELIMTSDKTIDARGANVQIAYGAGITLQYINNVIIHGLRIHHIVVGTGGMIRDAVDHVGLRTMSDGDGISIFGSSNVWIDHVSMSNCHDGLIDAIMGSTGITISNSHFTHHNEVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNVYAKEVTKREYSPENVWKSWTWRSEGDLMMNGAFFVSSGDQSKSRPFSRMDMISYKPGTYVTRMTRFAGALPCFIGRPC 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10207175 10208941 - Tan0020466.1 Tan04g1114 749518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1114 439 SMART amb_all 164 361 IPR002022 -
Tan04g1114 439 Pfam Pectate lyase 177 355 IPR002022 -
Tan04g1114 439 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Tan04g1114 439 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Tan04g1114 439 PRINTS Pollen allergen Amb family signature 410 433 IPR018082 -
Tan04g1114 439 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Tan04g1114 439 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Tan04g1114 439 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Tan04g1114 439 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Tan04g1114 439 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Tan04g1114 439 Gene3D - 89 432 IPR012334 -
Tan04g1114 439 PANTHER PECTATE LYASE 18-RELATED 39 434 IPR045032 GO:0030570(InterPro)
Tan04g1114 439 Pfam Pectate lyase, N terminus 28 79 IPR007524 GO:0030570(InterPro)
Tan04g1114 439 SUPERFAMILY Pectin lyase-like 90 430 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1114 Tan-Chr4:10207175 Tan07g1259 Tan-Chr7:56526653 4.10E-173 dispersed
Tan01g3372 Tan-Chr1:94151149 Tan04g1114 Tan-Chr4:10207175 1.20E-169 transposed
Tan04g1114 Tan-Chr4:10207175 Tan05g2084 Tan-Chr5:71263800 1.10E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1114 K01728 - csv:101206497 790.801