Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g1128 | ATGAGTCGCAAGAGAGACAAACCCTACCCTTCCACCCACCTCCCAACCTCCGTCGTTAAGAGGCGGCGCCCTCCGCCGCCAGCGGAGGACGATGATATGGACAAGCCCTTGTCGAAGCCTGCGCCACCGCCGGCCCTAGTCGTCGTTGACCTACCTTCACACTGTTCAGTGCTTGACTTGAAGTCCCGTTTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGCGTTGGTTACATCACTTATCGCACCAAAGACTCCGCTGATGCCGCCATGGCCGCCGCCCTCGACCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTAAGGTATTATGGGCGAATGATTCTCAAGTGCAATGGAGGCAAGGGATTAATGTTGGTGTTAACAAGAATAAGGAGTTGTCATCGAAGCTCTTGCGGGCAGAAGTGCCTCTGAGCAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTTAACCCCAGAAAAACTGACAGTTCTTCTAGGCTACAATTAATGGAAGACGACGGCGAGCAAGAGATATGGAGTTGGGGGGCAGGAACCGACGGGCAGCTGGGCACCGGGCGTCTAGAGGACGAGACCGTCCCTCAACTCCTCCGAACTCCGTCACTCTCCTCCGCCACTGCCATCTCATCCCTGTCCTGCGGCGGTGCTCATGTTATCGCTTTGACTGCCGGGGGTGGAGTGCTCACATGGGGAAGAGGCAATTCAGGGCAGTTGGGGCTAGGGGACATGGCGAACAGCTTACACCCTAAGCCAGTGATGGGGTTGGAAAGCTACTTCATAACCCACGTTTCTGCCGGATGGAGCCATTCTGGTTTTGTTTCAGATGAGGGAAAGCTTTATACTTGTGGGGATGGCTCATTTGGACAGCTAGGGCATGGTGATTTCCAGTCACGTTGCTTCCCTGATGAAGTCTTGTTTTTCTCTGATAAACATGTTGATCAGATTGCTTGTGGAATGCGCCACTCGCTTGCATTGGTGAAAGGTTGTTCTGGTGTTCAAGTTTATGGATTTGGAGCTGGTAAGCGAGGCCAATTGGGTATCTCCAAGAAGATTCAATCTACTAATCTTCCCATACTTTCTTCCGAATCGGTAGCTGCTGAAATAGTTGGCATAGCTGCAGGTGGAGATCACAGTGCTGCATTATCCTCTGATGGGCGTCTCTTCACTTGGGGAAGGGGATTCAAAAGCAATTCTGACGCATATTCTCCTCTACTTCTACCTTCTCCTTTGTTGTTCAGTAAAGTTGTTCTTGGATGGAATCATGCACTAGTTTTAACTGATGATGGGAAACTTTATATCCTTGGTGGCAAACATCACGGGACGTTGAGTGATTCTGAAAAGCTAAATGCCATGAAGTCTCTGCCTGGTGATTCAGAGGAAGACAATCTTCGAGCAGTCCCTGCTCTTAGTGGGATAAAAATTTTGGATATTGCAGCTGGGGCCGAGCATTCTGCAATTGTTACAGAGGATGGAGCTGTTAAGACTTGGGGTTGGGGGGAGCATGGTCAGCTGGGTTTGGGAGATACATGTGACCACACCAACCCACAAACAGTTAATCTGAGCCCCAAACTTGAGGGTGCTGCTTTTGACATCAAAGTCTATTGTGGCAGTGGCTTTACAGTTGCTATTACAACACCTCATGCGACTGCAAATCTCTCCAATTGA | 1704 | 50.06 | MSRKRDKPYPSTHLPTSVVKRRRPPPPAEDDDMDKPLSKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVKVLWANDSQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRKTDSSSRLQLMEDDGEQEIWSWGAGTDGQLGTGRLEDETVPQLLRTPSLSSATAISSLSCGGAHVIALTAGGGVLTWGRGNSGQLGLGDMANSLHPKPVMGLESYFITHVSAGWSHSGFVSDEGKLYTCGDGSFGQLGHGDFQSRCFPDEVLFFSDKHVDQIACGMRHSLALVKGCSGVQVYGFGAGKRGQLGISKKIQSTNLPILSSESVAAEIVGIAAGGDHSAALSSDGRLFTWGRGFKSNSDAYSPLLLPSPLLFSKVVLGWNHALVLTDDGKLYILGGKHHGTLSDSEKLNAMKSLPGDSEEDNLRAVPALSGIKILDIAAGAEHSAIVTEDGAVKTWGWGEHGQLGLGDTCDHTNPQTVNLSPKLEGAAFDIKVYCGSGFTVAITTPHATANLSN | 567 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10385650 | 10395884 | + | Tan0009367.1 | Tan04g1128 | 749532 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g1128 | 567 | SMART | rrm1_1 | 45 | 115 | IPR000504 | GO:0003723(InterPro) | |
Tan04g1128 | 567 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 345 | 397 | IPR000408 | - | |
Tan04g1128 | 567 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 238 | 285 | IPR000408 | - | |
Tan04g1128 | 567 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 184 | 234 | IPR000408 | - | |
Tan04g1128 | 567 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 289 | 338 | IPR000408 | - | |
Tan04g1128 | 567 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 503 | 556 | IPR000408 | - | |
Tan04g1128 | 567 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 346 | 394 | IPR000408 | - | |
Tan04g1128 | 567 | MobiDBLite | consensus disorder prediction | 23 | 37 | - | - | |
Tan04g1128 | 567 | Pfam | RNA recognition motif | 46 | 97 | IPR000504 | GO:0003723(InterPro) | |
Tan04g1128 | 567 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 183 | 237 | IPR000408 | - | |
Tan04g1128 | 567 | SUPERFAMILY | RCC1/BLIP-II | 183 | 559 | IPR009091 | - | |
Tan04g1128 | 567 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Tan04g1128 | 567 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 290 | 341 | IPR000408 | - | |
Tan04g1128 | 567 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 238 | 289 | IPR000408 | - | |
Tan04g1128 | 567 | SUPERFAMILY | RNA-binding domain, RBD | 20 | 128 | IPR035979 | GO:0003676(InterPro) | |
Tan04g1128 | 567 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 426 | 446 | - | - | |
Tan04g1128 | 567 | CDD | RRM_SF | 46 | 90 | - | - | |
Tan04g1128 | 567 | Gene3D | - | 468 | 562 | IPR009091 | - | |
Tan04g1128 | 567 | Gene3D | - | 154 | 467 | IPR009091 | - | |
Tan04g1128 | 567 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 328 | 338 | IPR000408 | - | |
Tan04g1128 | 567 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 384 | 394 | IPR000408 | - | |
Tan04g1128 | 567 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 504 | 559 | IPR000408 | - | |
Tan04g1128 | 567 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 221 | 560 | IPR051210 | - | |
Tan04g1128 | 567 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 442 | 503 | IPR000408 | - | |
Tan04g1128 | 567 | Gene3D | - | 25 | 153 | IPR012677 | - | |
Tan04g1128 | 567 | PRINTS | Chromosome condensation regulator RCC1 signature | 499 | 520 | IPR000408 | - | |
Tan04g1128 | 567 | PRINTS | Chromosome condensation regulator RCC1 signature | 184 | 200 | IPR000408 | - | |
Tan04g1128 | 567 | PRINTS | Chromosome condensation regulator RCC1 signature | 240 | 256 | IPR000408 | - | |
Tan04g1128 | 567 | PRINTS | Chromosome condensation regulator RCC1 signature | 221 | 234 | IPR000408 | - | |
Tan04g1128 | 567 | PRINTS | Chromosome condensation regulator RCC1 signature | 431 | 449 | IPR000408 | - | |
Tan04g1128 | 567 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 44 | 119 | IPR000504 | GO:0003723(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g1128 | Tan-Chr4:10385650 | Tan11g0343 | Tan-Chr11:2695632 | 8.60E-22 | dispersed | |
Tan04g1128 | Tan-Chr4:10385650 | Tan03g0925 | Tan-Chr3:65573974 | 6.80E-19 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g1128 | - | - | - | 0.0 |