Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1128 ATGAGTCGCAAGAGAGACAAACCCTACCCTTCCACCCACCTCCCAACCTCCGTCGTTAAGAGGCGGCGCCCTCCGCCGCCAGCGGAGGACGATGATATGGACAAGCCCTTGTCGAAGCCTGCGCCACCGCCGGCCCTAGTCGTCGTTGACCTACCTTCACACTGTTCAGTGCTTGACTTGAAGTCCCGTTTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGCGTTGGTTACATCACTTATCGCACCAAAGACTCCGCTGATGCCGCCATGGCCGCCGCCCTCGACCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTAAGGTATTATGGGCGAATGATTCTCAAGTGCAATGGAGGCAAGGGATTAATGTTGGTGTTAACAAGAATAAGGAGTTGTCATCGAAGCTCTTGCGGGCAGAAGTGCCTCTGAGCAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTTAACCCCAGAAAAACTGACAGTTCTTCTAGGCTACAATTAATGGAAGACGACGGCGAGCAAGAGATATGGAGTTGGGGGGCAGGAACCGACGGGCAGCTGGGCACCGGGCGTCTAGAGGACGAGACCGTCCCTCAACTCCTCCGAACTCCGTCACTCTCCTCCGCCACTGCCATCTCATCCCTGTCCTGCGGCGGTGCTCATGTTATCGCTTTGACTGCCGGGGGTGGAGTGCTCACATGGGGAAGAGGCAATTCAGGGCAGTTGGGGCTAGGGGACATGGCGAACAGCTTACACCCTAAGCCAGTGATGGGGTTGGAAAGCTACTTCATAACCCACGTTTCTGCCGGATGGAGCCATTCTGGTTTTGTTTCAGATGAGGGAAAGCTTTATACTTGTGGGGATGGCTCATTTGGACAGCTAGGGCATGGTGATTTCCAGTCACGTTGCTTCCCTGATGAAGTCTTGTTTTTCTCTGATAAACATGTTGATCAGATTGCTTGTGGAATGCGCCACTCGCTTGCATTGGTGAAAGGTTGTTCTGGTGTTCAAGTTTATGGATTTGGAGCTGGTAAGCGAGGCCAATTGGGTATCTCCAAGAAGATTCAATCTACTAATCTTCCCATACTTTCTTCCGAATCGGTAGCTGCTGAAATAGTTGGCATAGCTGCAGGTGGAGATCACAGTGCTGCATTATCCTCTGATGGGCGTCTCTTCACTTGGGGAAGGGGATTCAAAAGCAATTCTGACGCATATTCTCCTCTACTTCTACCTTCTCCTTTGTTGTTCAGTAAAGTTGTTCTTGGATGGAATCATGCACTAGTTTTAACTGATGATGGGAAACTTTATATCCTTGGTGGCAAACATCACGGGACGTTGAGTGATTCTGAAAAGCTAAATGCCATGAAGTCTCTGCCTGGTGATTCAGAGGAAGACAATCTTCGAGCAGTCCCTGCTCTTAGTGGGATAAAAATTTTGGATATTGCAGCTGGGGCCGAGCATTCTGCAATTGTTACAGAGGATGGAGCTGTTAAGACTTGGGGTTGGGGGGAGCATGGTCAGCTGGGTTTGGGAGATACATGTGACCACACCAACCCACAAACAGTTAATCTGAGCCCCAAACTTGAGGGTGCTGCTTTTGACATCAAAGTCTATTGTGGCAGTGGCTTTACAGTTGCTATTACAACACCTCATGCGACTGCAAATCTCTCCAATTGA 1704 50.06 MSRKRDKPYPSTHLPTSVVKRRRPPPPAEDDDMDKPLSKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVKVLWANDSQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRKTDSSSRLQLMEDDGEQEIWSWGAGTDGQLGTGRLEDETVPQLLRTPSLSSATAISSLSCGGAHVIALTAGGGVLTWGRGNSGQLGLGDMANSLHPKPVMGLESYFITHVSAGWSHSGFVSDEGKLYTCGDGSFGQLGHGDFQSRCFPDEVLFFSDKHVDQIACGMRHSLALVKGCSGVQVYGFGAGKRGQLGISKKIQSTNLPILSSESVAAEIVGIAAGGDHSAALSSDGRLFTWGRGFKSNSDAYSPLLLPSPLLFSKVVLGWNHALVLTDDGKLYILGGKHHGTLSDSEKLNAMKSLPGDSEEDNLRAVPALSGIKILDIAAGAEHSAIVTEDGAVKTWGWGEHGQLGLGDTCDHTNPQTVNLSPKLEGAAFDIKVYCGSGFTVAITTPHATANLSN 567
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 10385650 10395884 + Tan0009367.1 Tan04g1128 749532
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1128 567 SMART rrm1_1 45 115 IPR000504 GO:0003723(InterPro)
Tan04g1128 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 345 397 IPR000408 -
Tan04g1128 567 Pfam Regulator of chromosome condensation (RCC1) repeat 238 285 IPR000408 -
Tan04g1128 567 Pfam Regulator of chromosome condensation (RCC1) repeat 184 234 IPR000408 -
Tan04g1128 567 Pfam Regulator of chromosome condensation (RCC1) repeat 289 338 IPR000408 -
Tan04g1128 567 Pfam Regulator of chromosome condensation (RCC1) repeat 503 556 IPR000408 -
Tan04g1128 567 Pfam Regulator of chromosome condensation (RCC1) repeat 346 394 IPR000408 -
Tan04g1128 567 MobiDBLite consensus disorder prediction 23 37 - -
Tan04g1128 567 Pfam RNA recognition motif 46 97 IPR000504 GO:0003723(InterPro)
Tan04g1128 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 183 237 IPR000408 -
Tan04g1128 567 SUPERFAMILY RCC1/BLIP-II 183 559 IPR009091 -
Tan04g1128 567 MobiDBLite consensus disorder prediction 1 41 - -
Tan04g1128 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 290 341 IPR000408 -
Tan04g1128 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 238 289 IPR000408 -
Tan04g1128 567 SUPERFAMILY RNA-binding domain, RBD 20 128 IPR035979 GO:0003676(InterPro)
Tan04g1128 567 Pfam Regulator of chromosome condensation (RCC1) repeat 426 446 - -
Tan04g1128 567 CDD RRM_SF 46 90 - -
Tan04g1128 567 Gene3D - 468 562 IPR009091 -
Tan04g1128 567 Gene3D - 154 467 IPR009091 -
Tan04g1128 567 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 328 338 IPR000408 -
Tan04g1128 567 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 384 394 IPR000408 -
Tan04g1128 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 559 IPR000408 -
Tan04g1128 567 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 221 560 IPR051210 -
Tan04g1128 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 442 503 IPR000408 -
Tan04g1128 567 Gene3D - 25 153 IPR012677 -
Tan04g1128 567 PRINTS Chromosome condensation regulator RCC1 signature 499 520 IPR000408 -
Tan04g1128 567 PRINTS Chromosome condensation regulator RCC1 signature 184 200 IPR000408 -
Tan04g1128 567 PRINTS Chromosome condensation regulator RCC1 signature 240 256 IPR000408 -
Tan04g1128 567 PRINTS Chromosome condensation regulator RCC1 signature 221 234 IPR000408 -
Tan04g1128 567 PRINTS Chromosome condensation regulator RCC1 signature 431 449 IPR000408 -
Tan04g1128 567 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 119 IPR000504 GO:0003723(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1128 Tan-Chr4:10385650 Tan11g0343 Tan-Chr11:2695632 8.60E-22 dispersed
Tan04g1128 Tan-Chr4:10385650 Tan03g0925 Tan-Chr3:65573974 6.80E-19 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1128 - - - 0.0