Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1142 ATGGCAAAACATCAAGACGTGAAGCTTCTGGGTTTGTGGAGTAGTCCATTTGTGATGAGGGCCAGAATCGCCCTCAATATCAAATCTGTAAACTACGAGTTTCTTGAGGAAACATTCGGATCCAAAAGCCAGCTCCTTCTCCAATCCAACCCTGTTCATAAGAAAATCCCTGTTCTCATTCATCACAATAACCCCATCGCCGAATCCTTAATCATCGTTCAGTATATCGATGAAGTCTGGTCCTCTGCTCCTTCCATCCTTCCCTCTGATCCTTACGATCGCGCCATGGCTCGATTTTGGGCCGCCTTTGTCGACGACAAGCTTTTCACACCCATGAAAGCGACTCTGGCTGCAGAAGGGGAAGCGAAACAGGGGCTTATCGATCAAGCCGTCGAAGCTATAGGTTTATTGGAGGAAGCTTTTGGAAAGCTGAGCAAAGGGAAGGGGTTCTTCGGCGGAGACCATATTGGGTTTGTTGATATTTCTTTTGGTTCGTTTTTGGGATGGCTTAAAGTGATTGAAATATCAAATGGGGTGAAATTTATAGACGGAGTGAAGACTCCAGGCCTGGCCGGATGGGCTGAGAAATTCTCTGCAGACGGCGCTGTGAAAGATTTGTTGCCGGACACTGAGAAGCTTCTGGAGTTTGCTAAGGTTCTTGAAGCCACAATGAAAGGAGGTCCTCGTCCTTCCAATTAG 699 47.07 MAKHQDVKLLGLWSSPFVMRARIALNIKSVNYEFLEETFGSKSQLLLQSNPVHKKIPVLIHHNNPIAESLIIVQYIDEVWSSAPSILPSDPYDRAMARFWAAFVDDKLFTPMKATLAAEGEAKQGLIDQAVEAIGLLEEAFGKLSKGKGFFGGDHIGFVDISFGSFLGWLKVIEISNGVKFIDGVKTPGLAGWAEKFSADGAVKDLLPDTEKLLEFAKVLEATMKGGPRPSN 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10624661 10625833 - Tan0012324.1 Tan04g1142 749546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1142 232 SUPERFAMILY GST C-terminal domain-like 78 220 IPR036282 -
Tan04g1142 232 CDD GST_C_Tau 91 220 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Tan04g1142 232 Gene3D Glutaredoxin 1 86 - -
Tan04g1142 232 Pfam Glutathione S-transferase, N-terminal domain 6 78 IPR004045 -
Tan04g1142 232 Gene3D - 87 229 - -
Tan04g1142 232 FunFam Glutathione S-transferase GSTU6 2 87 - -
Tan04g1142 232 CDD GST_N_Tau 7 80 - -
Tan04g1142 232 SUPERFAMILY Thioredoxin-like 6 109 IPR036249 -
Tan04g1142 232 Pfam Glutathione S-transferase, C-terminal domain 122 194 - -
Tan04g1142 232 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 218 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Tan04g1142 232 FunFam Glutathione S-transferase U9 87 226 - -
Tan04g1142 232 SFLD Main (cytGST) 3 225 - -
Tan04g1142 232 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 216 IPR010987 -
Tan04g1142 232 SFLD Main.3: Omega- and Tau-like 3 225 IPR045073 -
Tan04g1142 232 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1142 Tan-Chr4:10624661 Tan10g0407 Tan-Chr10:3273542 6.60E-45 dispersed
Tan04g1142 Tan-Chr4:10624661 Tan04g1143 Tan-Chr4:10637086 5.60E-113 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1142 K00799 - mdm:139193209 310.842