Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan04g1152 | ATGAGTGGATGGGATAGGGTTAGACCATCGAGTTCGAGATTTGGCCGCGACAATTCTGCAATGCATGAGAGGACCTCCTCTACTACCACGGTTCGACTCGGCCGAGTCCAGCCGCAGGCTCCTGGACATCGCACCATCTTCTGCAACGATCGCGACGCTAATCTCCTTGTTAAATTCAAGGGGAATTCAGTTTCGACGACTAAGTACAACTTCTTCACTTTCTTTCCGAAAGGGCTGTTTGAACAGTTCAGGCGCGTGGCTAACCTATACTTTCTTACAATCTCTATCTTATCCACTACACCCATCAGTCCCGTGCATCCAATTACAAATGTGGTCCCTTTAAGTCTGGTTCTACTCGTCTCTCTCATTAAAGAAGCATTTGAGGACTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGATGTGCTACAAGATCAAAAGTGGGAGAGCGTTCCTTGGAAAAGGTTGCAGGTTGGGGACATTGTTAGGGTTCGGCAAGATGGATTTTTTCCTGCAGATCTTCTTTTCCTTGCGAGTACAAATCCAGATGGTGTTTGCTACATTGAGACTGCTAACCTGGACGGGGAGACAAATTTGAAGATTAGAAAGGCCCTGGAAAAGACCTGGGATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACCGGCAATGTTATTATTCAGAAGCAAACATTACCTCTCAGCCCAAACCAACTTTTATTGCGAGGATGCAGTCTCAGGAACACTGAATATATTGTTGGGGCTGTTATTTTTACAGGTCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGCACTCTGGAGAAAAAACTTGACAAACTTATACTCGCACTTTTTGCTACTCTCTTTATCATGTGTTTGATTGGAGCAATTGGCAGTGGCGTGTTTGTAAATCAAAAGTACTACTACTTGGCTCTTGATAAGGGAGGGGAAAACCAATTTAACCCTCGCAACCGATTCCTGGTTGTCATTCTGACCATGTTTACCCTGATTACTCTGTACTCGACCATCATTCCTATTTCTCTTTATGTTTCCATTGAGATGATCAAATTTATTCAATCGACACAATATATCAATAAGGATCTAAATATGTTCCATGCTGATAGCAATACCCCTGCATTGGCTAGAACTTCCAATCTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATCTAATGGAGTTCTTTAAGTGTTCAATCGGTGGAGAGATTTATGGCACTGGTATCACTGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGAACACAAATCCAATGCTGTACAAGAAAAGGGATTTAATTTTGATGATGCTAGGCTTATGAGAGGAGCATGGAGAAATGAGCCCAACTCTGATCTTTGTAAGGAATTTTTCAGATGCCTTGCTATTTGCCATACTGTACTCCCTGAGGGCGATGAATCCCCTGAAAAGATCACATATCAAGCAGCATCACCTGATGAGGCTGCCTTGGTAACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGTACACCTACTACAATATATGTTCGGGAATCTCATGTTGAGAAGATGGGTAAAATCCTAGATGTTTCTTATGAAATTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCTGTGGTGTGTCGTTATTCCGATGGTAGGCTTGTCTTGTACTGCAAGGGTGCTGATACTGTAATATATGAGAGATTGGCTGGTGGAAATGAAGATCTGAAGAACGTAAGTAGGGAACACTTGGAGAAATTTGGATCTTCCGGTTTGAGAACCCTATGCCTTGCTTATAGAGATTTGCATCCTGACGTGTATGAAAGCTGGAATGAGAAATTCATTCAAGCGAAGTCTTCCTTAAGAGATCGTGAAAAGAAATTGGATGAGGTAGCAGAACTTATAGAGAAAGACCTTATTTTGATTGGTTGTACTGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAACTGTATACAGACACTTTCTAGAGCTGGTATCAAGATTTGGGTGCTAACGGGAGACAAGATGGAAACTGCTATTAATATTGCTTATGCTTGCAATTTAATAAACAATGAAATGAAACAATTTATTATCAGTTCAGAAACCGATGCAATCAGAGAAGTTGAAAACAGGGGCGACCAAGTAGAACTTGCACGTTTTACTAGAGAAGAAGTAAAGAAGGAATTGAAGAAATGTCTTGAGGAAGCGCAGCAGTGTTTACAATCTGTGTCTCCACCAAAATTAGCTCTTGTTATAGATGGAAAATGTTTGATGTATGCGTTAGATCCAAGTCTGCGAGTTACTTTACTAAATTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGAGTTTCTCCTTTGCAGAAAGCGCAGGTGACAAGTCTGGTGAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGTGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAGGGAATGCAAGCAGTGATGGCTAGTGATTTTGCTATTGCCCAGTTTCGCTTTCTCACAGATTTACTTCTCGTGCATGGGCGATGGTCATATCTTAGAATATGCAAGGTTGTCACATACTTCTTTTACAAGAATCTTACGTTCACTTTAACTCAGTTTTGGTTCACCTTTCAAACTGGATTTTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTGTATAATGTCATATTTACCGCCCTACCTGTAATAATTGTCGGACTATTTGACAAGGTACTGCATTCTTTCCTACTATTTTGCTCATGGTCATGGCATGTAATGCTTTGCTATTGA | 2961 | 40.9 | MSGWDRVRPSSSRFGRDNSAMHERTSSTTTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESVPWKRLQVGDIVRVRQDGFFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILALFATLFIMCLIGAIGSGVFVNQKYYYLALDKGGENQFNPRNRFLVVILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGTGITEIERGIAEQNGLKVEEEHKSNAVQEKGFNFDDARLMRGAWRNEPNSDLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKILDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVIYERLAGGNEDLKNVSREHLEKFGSSGLRTLCLAYRDLHPDVYESWNEKFIQAKSSLRDREKKLDEVAELIEKDLILIGCTAIEDKLQEGVPNCIQTLSRAGIKIWVLTGDKMETAINIAYACNLINNEMKQFIISSETDAIREVENRGDQVELARFTREEVKKELKKCLEEAQQCLQSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKVLHSFLLFCSWSWHVMLCY | 986 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 10788420 | 10802436 | + | Tan0021442.2 | Tan04g1152 | 749556 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan04g1152 | 986 | FunFam | Phospholipid-transporting ATPase | 686 | 893 | - | - | |
| Tan04g1152 | 986 | Gene3D | - | 124 | 289 | - | - | |
| Tan04g1152 | 986 | SUPERFAMILY | HAD-like | 410 | 896 | IPR036412 | - | |
| Tan04g1152 | 986 | Pfam | Cation transport ATPase (P-type) | 517 | 614 | - | - | |
| Tan04g1152 | 986 | FunFam | Phospholipid-transporting ATPase IC | 419 | 431 | - | - | |
| Tan04g1152 | 986 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 424 | 430 | IPR018303 | - | |
| Tan04g1152 | 986 | Coils | Coil | 768 | 788 | - | - | |
| Tan04g1152 | 986 | CDD | P-type_ATPase_APLT_Dnf-like | 61 | 967 | - | - | |
| Tan04g1152 | 986 | FunFam | Phospholipid-transporting ATPase | 530 | 685 | - | - | |
| Tan04g1152 | 986 | Pfam | E1-E2 ATPase | 143 | 322 | - | - | |
| Tan04g1152 | 986 | SFLD | Haloacid Dehalogenase | 404 | 904 | - | - | |
| Tan04g1152 | 986 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 30 | 970 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER) | |
| Tan04g1152 | 986 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Tan04g1152 | 986 | NCBIfam | phospholipid-translocating P-type ATPase | 59 | 970 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
| Tan04g1152 | 986 | Gene3D | - | 532 | 686 | IPR023299 | GO:0000166(InterPro) | |
| Tan04g1152 | 986 | Pfam | Phospholipid-translocating ATPase N-terminal | 46 | 110 | IPR032631 | - | |
| Tan04g1152 | 986 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 881 | 970 | IPR032630 | - | |
| Tan04g1152 | 986 | SUPERFAMILY | Calcium ATPase, transduction domain A | 141 | 285 | IPR008250 | - | |
| Tan04g1152 | 986 | MobiDBLite | consensus disorder prediction | 13 | 31 | - | - | |
| Tan04g1152 | 986 | FunFam | Phospholipid-transporting ATPase | 120 | 289 | - | - | |
| Tan04g1152 | 986 | SFLD | p-type atpase | 404 | 904 | IPR044492 | - | |
| Tan04g1152 | 986 | Gene3D | - | 687 | 893 | IPR023214 | - | |
| Tan04g1152 | 986 | NCBIfam | HAD-IC family P-type ATPase | 826 | 932 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Tan04g1152 | 986 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 429 | 692 | IPR023299 | GO:0000166(InterPro) | |
| Tan04g1152 | 986 | PRINTS | P-type cation-transporting ATPase superfamily signature | 422 | 436 | - | - | |
| Tan04g1152 | 986 | PRINTS | P-type cation-transporting ATPase superfamily signature | 853 | 872 | - | - | |
| Tan04g1152 | 986 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 54 | 974 | IPR023298 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan04g1152 | Tan-Chr4:10788420 | Tan11g2053 | Tan-Chr11:43586445 | 3.40E-260 | dispersed | |
| Tan04g1151 | Tan-Chr4:10788420 | Tan04g1152 | Tan-Chr4:10788420 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan04g1152 | K14802 | - | csv:101207069 | 1822.75 |