Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1168 ATGGCTAGAAACCCTGTCTTCTCCCGCCGGCGGAGGTCCGATCAGATCGAAGCTCTAGATCGCTACCCCACCTCTGATTCCGAGGTTCATGTTCTCGCCGTCGACGACAGCCTCGTCGACCGTACAGTAATTGAACGTCTCCTCCGGCTCACCGCCTGCCGAGTGGATAGTGGAATTAGAGCTCTACAATATCTTGGATTGCAAGAGGAGACGAATTCTCAAGTGGGTTTTGATGGGTTGAAGGTCGATATGATCATCACCGACTACTGTATGCCTGGAATGACAGGCTACGAATTGCTCAAGAAAATAAAGGAATCTACTACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAAAACGTGGTGGCGAGGATTGACAGATGTTTGGAGGAAGGAGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAACGGCTCAGGGAATATATGGTGGGGGACGAAAAGACTGGAAATGAAAGAAGTGGGATCAACAAAAGGAAGCTACGAGAGCCGTGTGATCAACCTTCATCATCGCCATCCATTTCATCACCAGCATCATCCGATTCCTCTCCATCATCTTCATCACCGTCAGATTCGCTTCAATCCACCCCATCATCATCAGAGCCATCTTCTCCGACGTCCACTCCTCAATCCGACGCCTCTAAATGA 681 49.19 MARNPVFSRRRRSDQIEALDRYPTSDSEVHVLAVDDSLVDRTVIERLLRLTACRVDSGIRALQYLGLQEETNSQVGFDGLKVDMIITDYCMPGMTGYELLKKIKESTTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKTGNERSGINKRKLREPCDQPSSSPSISSPASSDSSPSSSSPSDSLQSTPSSSEPSSPTSTPQSDASK 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10930635 10931630 - Tan0009569.1 Tan04g1168 749572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1168 226 MobiDBLite consensus disorder prediction 159 176 - -
Tan04g1168 226 MobiDBLite consensus disorder prediction 177 226 - -
Tan04g1168 226 SMART REC_2 29 151 IPR001789 GO:0000160(InterPro)
Tan04g1168 226 SUPERFAMILY CheY-like 29 152 IPR011006 -
Tan04g1168 226 CDD REC_typeA_ARR 31 150 - -
Tan04g1168 226 MobiDBLite consensus disorder prediction 159 226 - -
Tan04g1168 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 215 IPR045279 GO:0009736(InterPro)
Tan04g1168 226 Gene3D - 29 188 - -
Tan04g1168 226 ProSiteProfiles Response regulatory domain profile. 30 155 IPR001789 GO:0000160(InterPro)
Tan04g1168 226 Pfam Response regulator receiver domain 31 147 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1168 Tan-Chr4:10930635 Tan08g1252 Tan-Chr8:38118784 2.00E-38 dispersed
Tan04g1168 Tan-Chr4:10930635 Tan09g2194 Tan-Chr9:71968697 3.40E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27234 PF00072 Response_reg 4.20E-19 CL0304 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1168 K14492 - csv:101209506 339.732