Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1185 ATGTCCGTATCGATTTCCAACTGCTTCTCTGATTTACTCTGCCAGGAGGAATCCTCCGGCGTCTTGTCCGGCGAGTCGCCGGGATGTTCTTCCGACCTCGATTCTCCGGCTTGCGTCGAGGAATCGATAGCCGTCTTCATCAAGGACGAGCGCCACTTCGTCCCCGACTACGACTGTTTGTCGCGCTTCCAATCTCCGTCGCTGGACGCGGCCGCTAGATTAGACTCTGTTGCATGGATTCTTAAGGTTCAAGCCTATTACGGTTTTCAGCCGTTGACGGCGTATCTCTCCGTCAACTACTTGGATCGATTCCTTTGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCTTTGCAACTCCTCTCTGTTGCTTGCCTCTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCTTTACTGGATCTTCAGGTTGAGGGGGCCAAATATATATTTGAACCCAGAACAATATGCAGGATGGAATTACTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCTGTAACGCCATTCAATTTCATTGCATTCTTTGCTTGCAAGCTCGATCCATCGGGAGATTTCATCGGGTTTCTTATTTCAAGAGCAACAGAAATTATACTATCGAATATCCGAGAGGTAATCTTTCTGGAGTACTGGCCATCGTGTATTGCGGCGGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGAATTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGCAAGAGATTGTCCTTGATAGTAGCCGGATCAAGTCCCCCAAAATCTTACCTCAGCTTAGAGTGACACTCCGCACTAGAATGAGATCCAGTGACTTATCCTCCTATTCCTCCTCCTCTTCCTCATCTTCATCATCACCAAACAAAAGGAGAAAATTAAACCAGAGCCTCTGGGTAGATGATGACAAAGGAAACACCGAAGAATGA 999 48.25 MSVSISNCFSDLLCQEESSGVLSGESPGCSSDLDSPACVEESIAVFIKDERHFVPDYDCLSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIILSNIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKENIIGCYRLMQEIVLDSSRIKSPKILPQLRVTLRTRMRSSDLSSYSSSSSSSSSSPNKRRKLNQSLWVDDDKGNTEE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11087699 11091994 + Tan0018579.1 Tan04g1185 749589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1185 332 SMART cyclin_7 78 166 IPR013763 -
Tan04g1185 332 Pfam Cyclin, N-terminal domain 43 173 IPR006671 -
Tan04g1185 332 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Tan04g1185 332 ProSitePatterns Cyclins signature. 73 104 IPR048258 -
Tan04g1185 332 SMART Cyclin_C_2 175 311 IPR004367 -
Tan04g1185 332 SUPERFAMILY Cyclin-like 34 172 IPR036915 -
Tan04g1185 332 SUPERFAMILY Cyclin-like 157 279 IPR036915 -
Tan04g1185 332 Gene3D - 56 173 - -
Tan04g1185 332 MobiDBLite consensus disorder prediction 294 332 - -
Tan04g1185 332 MobiDBLite consensus disorder prediction 294 317 - -
Tan04g1185 332 Gene3D - 47 236 - -
Tan04g1185 332 PANTHER CYCLINS 35 272 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan04g1185 332 MobiDBLite consensus disorder prediction 318 332 - -
Tan04g1185 332 Pfam Cyclin, C-terminal domain 175 279 IPR004367 -
Tan04g1185 332 FunFam D2/4-type cyclin 56 173 - -
Tan04g1185 332 CDD CYCLIN_AtCycD-like_rpt2 175 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0618 Tan-Chr1:5726517 Tan04g1185 Tan-Chr4:11087699 2.00E-53 dispersed
Tan01g2830 Tan-Chr1:57946820 Tan04g1185 Tan-Chr4:11087699 2.60E-127 dispersed
Tan01g4695 Tan-Chr1:112886526 Tan04g1185 Tan-Chr4:11087699 4.00E-37 dispersed
Tan02g2449 Tan-Chr2:93112921 Tan04g1185 Tan-Chr4:11087699 1.60E-45 dispersed
Tan03g0932 Tan-Chr3:65778530 Tan04g1185 Tan-Chr4:11087699 5.00E-21 dispersed
Tan03g1812 Tan-Chr3:73728676 Tan04g1185 Tan-Chr4:11087699 9.80E-40 dispersed
Tan04g1185 Tan-Chr4:11087699 Tan04g1187 Tan-Chr4:11087699 2.80E-174 dispersed
Tan04g1185 Tan-Chr4:11087699 Tan04g1186 Tan-Chr4:11087699 2.30E-144 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1185 K18810 - csv:101209417 577.785