Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1186 ATGTCCGTATCGATTTCCAACTGCTTCTCTGATTTACTCTGCCAGGAGGAATCCTCCGGCGTCTTGTCCGGCGAGTCGCCGGGATGTTCTTCCGACCTCGATTCTCCGGCTTGCGTCGAGGAATCGATAGCCGTCTTCATCAAGGACGAGCGCCACTTCGTCCCCGACTACGACTGTTTGTCGCGCTTCCAATCTCCGTCGCTGGACGCGGCCGCTAGATTAGACTCTGTTGCATGGATTCTTAAGGTTCAAGCCTATTACGGTTTTCAGCCGTTGACGGCGTATCTCTCCGTCAACTACTTGGATCGATTCCTTTGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCTTTGCAACTCCTCTCTGTTGCTTGCCTCTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCTTTACTGGATCTTCAGGTTGAGGGGGCCAAATATATATTTGAACCCAGAACAATATGCAGGATGGAATTACTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCTGTAACGCCATTCAATTTCATTGCATTCTTTGCTTGCAAGCTCGATCCATCGGGAGATTTCATCGGGTTTCTTATTTCAAGAGCAACAGAAATTATACTATCGAATATCCGAGAGGTAATCTTTCTGGAGTACTGGCCATCGTGTATTGCGGCGGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGAATTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGTGGTCTAAGGAAAGTAAGCACCAGATTGTGA 783 49.43 MSVSISNCFSDLLCQEESSGVLSGESPGCSSDLDSPACVEESIAVFIKDERHFVPDYDCLSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIILSNIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKVSTRL 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11087699 11091994 + Tan0018579.2 Tan04g1186 749590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1186 260 SMART cyclin_7 78 166 IPR013763 -
Tan04g1186 260 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Tan04g1186 260 FunFam D2/4-type cyclin 56 173 - -
Tan04g1186 260 Pfam Cyclin, C-terminal domain 175 243 IPR004367 -
Tan04g1186 260 Gene3D - 47 236 - -
Tan04g1186 260 ProSitePatterns Cyclins signature. 73 104 IPR048258 -
Tan04g1186 260 SUPERFAMILY Cyclin-like 34 172 IPR036915 -
Tan04g1186 260 PANTHER CYCLINS 35 251 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan04g1186 260 Gene3D - 56 173 - -
Tan04g1186 260 Pfam Cyclin, N-terminal domain 43 173 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1186 Tan-Chr4:11087699 Tan09g1561 Tan-Chr9:67495860 1.20E-10 dispersed
Tan04g1185 Tan-Chr4:11087699 Tan04g1186 Tan-Chr4:11087699 2.30E-144 tandem
Tan04g1186 Tan-Chr4:11087699 Tan04g1187 Tan-Chr4:11087699 4.10E-136 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1186 K18810 - csv:101209417 481.485