Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1187 ATGTCCGTATCGATTTCCAACTGCTTCTCTGATTTACTCTGCCAGGAGGAATCCTCCGGCGTCTTGTCCGGCGAGTCGCCGGGATGTTCTTCCGACCTCGATTCTCCGGCTTGCGTCGAGGAATCGATAGCCGTCTTCATCAAGGACGAGCGCCACTTCGTCCCCGACTACGACTGTTTGTCGCGCTTCCAATCTCCGTCGCTGGACGCGGCCGCTAGATTAGACTCTGTTGCATGGATTCTTAAGAATTCGTCGGCCATCACTGATACTCAACTCAATCAGATCCGAGTTGATCGACTCGGAATCCGCATCAGTGGCCGTCGGCGAATTCGTTTGATATTTCGTGATTATGCAGAACAGTATACTTTTATGTGTATCTCCGTCTCCGTCGTACACGGTGGTTATATAACATATTGCGATTATCTCTTTCAGGTTCAAGCCTATTACGGTTTTCAGCCGTTGACGGCGTATCTCTCCGTCAACTACTTGGATCGATTCCTTTGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCTTTGCAACTCCTCTCTGTTGCTTGCCTCTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCTTTACTGGATCTTCAGGTTGAGGGGGCCAAATATATATTTGAACCCAGAACAATATGCAGGATGGAATTACTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCTGTAACGCCATTCAATTTCATTGCATTCTTTGCTTGCAAGCTCGATCCATCGGGAGATTTCATCGGGTTTCTTATTTCAAGAGCAACAGAAATTATACTATCGAATATCCGAGAGGTAATCTTTCTGGAGTACTGGCCATCGTGTATTGCGGCGGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGAATTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGCAAGAGATTGTCCTTGATAGTAGCCGGATCAAGTCCCCCAAAATCTTACCTCAGCTTAGAGTGACACTCCGCACTAGAATGAGATCCAGTGACTTATCCTCCTATTCCTCCTCCTCTTCCTCATCTTCATCATCACCAAACAAAAGGAGAAAATTAAACCAGAGCCTCTGGGTAGATGATGACAAAGGAAACACCGAAGAATGA 1185 47.51 MSVSISNCFSDLLCQEESSGVLSGESPGCSSDLDSPACVEESIAVFIKDERHFVPDYDCLSRFQSPSLDAAARLDSVAWILKNSSAITDTQLNQIRVDRLGIRISGRRRIRLIFRDYAEQYTFMCISVSVVHGGYITYCDYLFQVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIILSNIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKENIIGCYRLMQEIVLDSSRIKSPKILPQLRVTLRTRMRSSDLSSYSSSSSSSSSSPNKRRKLNQSLWVDDDKGNTEE 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11087699 11091994 + Tan0018579.3 Tan04g1187 749591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1187 394 Gene3D - 229 367 - -
Tan04g1187 394 MobiDBLite consensus disorder prediction 356 394 - -
Tan04g1187 394 MobiDBLite consensus disorder prediction 356 379 - -
Tan04g1187 394 SUPERFAMILY Cyclin-like 136 234 IPR036915 -
Tan04g1187 394 SMART Cyclin_C_2 237 373 IPR004367 -
Tan04g1187 394 MobiDBLite consensus disorder prediction 380 394 - -
Tan04g1187 394 Pfam Cyclin, N-terminal domain 138 235 IPR006671 -
Tan04g1187 394 SUPERFAMILY Cyclin-like 219 341 IPR036915 -
Tan04g1187 394 SMART cyclin_7 140 228 IPR013763 -
Tan04g1187 394 CDD CYCLIN_AtCycD-like_rpt2 237 327 - -
Tan04g1187 394 Gene3D - 136 228 - -
Tan04g1187 394 CDD CYCLIN_AtCycD-like_rpt1 140 232 - -
Tan04g1187 394 FunFam D6-type cyclin 121 235 - -
Tan04g1187 394 Pfam Cyclin, C-terminal domain 237 340 IPR004367 -
Tan04g1187 394 PANTHER CYCLINS 139 331 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1185 Tan-Chr4:11087699 Tan04g1187 Tan-Chr4:11087699 2.80E-174 dispersed
Tan04g1187 Tan-Chr4:11087699 Tan09g1561 Tan-Chr9:67495860 1.80E-10 dispersed
Tan04g1186 Tan-Chr4:11087699 Tan04g1187 Tan-Chr4:11087699 4.10E-136 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1187 K18810 - csv:101209417 452.595