Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1212 ATGACATCAAGATCCACCACAAACTTTTTGGACCTGGCTTCTGGAGATTTACTGGATGTTCCTCGTACACCTAGGCCCCTGCCACGGGTAATGACTGTTCCTGGAATTATTTCCGAAATGGACGATTATGGGAGCAATGACGGAGATTCGGAATCTTCATCTGTATGCCGTGAGCGGAAAATCATAGTTGCAAATATGTTGCCCTTGCAAGCTAAAAAAGATGGGCAATCTGGCAAATGGTGCTTCAGTTCAGACGAGGATTCAATTTTATTGCAGCTAAAGAATGGATTTTCACCAGAGATAGAGGTTATATACGTGGGTTCCCTCAAGGTTGAAATCGACGCCAGCGAACAAGAAGAGGTTGCTCAGAAACTGTTCGACAATTTTAACTGTGTACCTACATTTCTACCTTATGATCTCCAGAAGAAATTTTATCTTGGGTTCTGCAAACAGCAGATATGGCCCTTATTCCATTACATGCTACCCATGTGCCCAGAGCACGGTGATCGCTTCGATCGGCTGCTTTGGCAAGCCTATGTTTCTGCAAATAAAATATTTGCTGACAAGGTGATGGAAATCATCAATCCTGAAGAAGATTCTGTTTGGGTTCATGATTATCATTTAATGGTTCTTCCAACGTTTCTGAGGAAGCGCTACAATCGAGTTAAACTTGGATTTTTCCTGCATAGCCCCTTTCCATCATCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATTCTCCGTGGCCTGCTAAACTGTGATTTAGTTGGTTTTCATACGTTTGATTATGCTCGTCACTTCCTCTCATGCTGCAGCAGAATGTTGGGCCTGGACTATGAATCTAAGCGGGGACATATTGGATTAGATTACTATGGCCGCACGGTATATATCAAAATTCTGCCCGTAGGCATTCACATGGGTCGATTGGAATCAGTGATGAATCTTCCATCTACATCCGCTAAAGTCAGAGAAATTCGAGATCAGTTCATGGGAAAGAAATTAATTCTTGGTATTGATGACATGGACATTTTTAAGGGCATAAGCCTGAAGCTTCTTGCCGTTGAACAGCTTTTACGGCAACGTCCTGAGTTGCGAGGCAAAATAGTCCTGGTTCAAATAGTGAACCCTGCAAGGGGTTCAGGGAAAGATGTACATGAAGCTCAGAAGGAAACCTACTTGGCTGCTGAAAGGATCAATGAAGCTTATGGTTCAAATGACTACAAACCTGTAATTCTGATTGATCGCCCCGTTCCACGTTTTGAGAAGACTGCTTATTATGCATTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGATGGCATGAATTTGGTTCCATACAAGTATATTGTTTGTAGGCAAGGAACTCCTCTTATGGATGGGGCTATGGGCTTACAAGTTGGTTCTCCTCGAACGAGTATGCTTGTAGTGTCCGAGTTTATTGGTTGCTCGCCTTCTTTAAGTGGAGCCATCAGGGTTAACCCTTGGGACATTGATGCTGTTGCCGATGCCTTGGAATTGGCCATAACCATGCAGGAGTCAGAGAAGCAGTTGCGGCATGAGAAACATTATCGATATGTCAGTTCCCATGATATAGGATACTGGTCTCGAAGTTTTATGCAGGATTTAGAGAGAGCATGTCAAGATCACTATAGTAAACGGTGCTGGGGAATTGGCTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCAGGATTTAGGAAGTTAACAATCGATCACATTGTCTCAGCTTATAAAAGAACGCATAGAAGAGCGATATTTTTGGATTACGACGGCACTATTATTTCACAAAGCTCTATAATTAAGACACCGAGCCCTGAAGTTATCTCCGTCTTGACTACGCTTTGCAATGACCCCTGTAACACTGTGTTCATTGTTAGTGGGAGGGGGAGAAGTTCTTTAGGTGAATGGTTTGCCTCTTGTGAGATGTTGGGGATTGCAGCAGAGCATGGGCACTTTATAAGGTGGGGTGGAACTTCAGAGTGGGAAACCAGTTCGTTGTCTTCTGATCTGGATTGGATTAAAATTGTAGAGCCAGTGATGAGATTATATACAGAAGCAACTGATGGGTCGTGCATAGAACGGAAAGAGAGTGCTTTAGTTTGGCATCATCAAGATGCTGATTCTGACTTCGGATCCTGTCAAGCTAAGGAATTGCTGGACCATCTAGAAAACGTACTTGCCAATGACCCAGCAGTCGTTAAAAGGGGCCAACATATAGTTGAAGTGAAGCCACAGGTATTCTTGTTTTATTGTCCGGTTCTATCTTTATCTATCTTATCAAATAGTATACCTCCAGTGTAA 2325 43.01 MTSRSTTNFLDLASGDLLDVPRTPRPLPRVMTVPGIISEMDDYGSNDGDSESSSVCRERKIIVANMLPLQAKKDGQSGKWCFSSDEDSILLQLKNGFSPEIEVIYVGSLKVEIDASEQEEVAQKLFDNFNCVPTFLPYDLQKKFYLGFCKQQIWPLFHYMLPMCPEHGDRFDRLLWQAYVSANKIFADKVMEIINPEEDSVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTSAKVREIRDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRQRPELRGKIVLVQIVNPARGSGKDVHEAQKETYLAAERINEAYGSNDYKPVILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPLMDGAMGLQVGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAITMQESEKQLRHEKHYRYVSSHDIGYWSRSFMQDLERACQDHYSKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRTHRRAIFLDYDGTIISQSSIIKTPSPEVISVLTTLCNDPCNTVFIVSGRGRSSLGEWFASCEMLGIAAEHGHFIRWGGTSEWETSSLSSDLDWIKIVEPVMRLYTEATDGSCIERKESALVWHHQDADSDFGSCQAKELLDHLENVLANDPAVVKRGQHIVEVKPQVFLFYCPVLSLSILSNSIPPV 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11273588 11279454 - Tan0014557.4 Tan04g1212 749616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1212 774 CDD GT20_TPS 59 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Tan04g1212 774 SUPERFAMILY HAD-like 591 753 IPR036412 -
Tan04g1212 774 Gene3D Glycogen Phosphorylase B; 312 528 - -
Tan04g1212 774 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 26 753 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
Tan04g1212 774 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
Tan04g1212 774 FunFam Trehalose-6-phosphate synthase 2 674 753 - -
Tan04g1212 774 Gene3D - 673 753 - -
Tan04g1212 774 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Tan04g1212 774 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Tan04g1212 774 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
Tan04g1212 774 NCBIfam HAD-IIB family hydrolase 592 732 IPR006379 -
Tan04g1212 774 Gene3D Glycogen Phosphorylase B; 52 311 - -
Tan04g1212 774 Pfam Trehalose-phosphatase 594 754 IPR003337 GO:0005992(InterPro)
Tan04g1212 774 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
Tan04g1212 774 Gene3D - 593 672 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1210 Tan-Chr4:11273588 Tan04g1212 Tan-Chr4:11273588 0.00E+00 dispersed
Tan04g1212 Tan-Chr4:11273588 Tan09g2228 Tan-Chr9:72247966 0.00E+00 dispersed
Tan04g1211 Tan-Chr4:11273588 Tan04g1212 Tan-Chr4:11273588 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1212 K16055 - csv:101212688 1471.83