Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1230 ATGGAAGCGATTCTCGCATCCACACCTTCGCAACTCAAATCTCCTCACCAATCTCTCTCTTCCAAATTGTGGCCTTCATTTTCCCTCGCTTTCCGGGAAACTAAACGGAAGACGATCAGAGTCGCTCCGGCGACGGCGTGTTCGCCGGCTTCTCCCACTCGTCTGAGAGTGTTCGCCACGTCGCAATCAGCGCCTGCTTCCGCCGTGACGTCGGAAGTGTCGTCGGTGCCGTCGGAAATGAAGGCGTGGGTTTACGGTGAGTATGGAGGCGTGGATGTGTTGAAGTTAGATAGCAATGTTTCGGTGCCTGAAGTGAAGGAGGATCAGATTCTGATTAAGGTCGTTGCGGCGGCGCTTAACCCTGTCGATGCTAAGCGGAGGCAGGGGAAGTTCAAGGCCACGGACTCTCCTCTTCCGACAGTTCCAGGGTATGATGTAGCAGGAGTGGTGGTGAAGGTGGGCAGTCTGGTGAAGGAGCTAAAAGAGGGGGATGAAGTTTATGGCAACATCAACGAGAAAGCTCTCGAAGACCTTAAACAGTTTGGTTCTCTTGCAGAGTACACAGCCGTAGAGGAGAAATTATTAGCCTTAAAACCCAAGAATATCGATTTTTTTCAGGCTGCTGGATTGCCTCTAGCCATTGAAACAGCTTACGAAGGTCTCGAAAAACTCAACTTTTCCGCTGGCAAATCGATTCTTGTTCTCAATGGCGCCGGTGGAGTTGGAAGCCTAGTCATTCAGATAGCAAAGCATGTGTTTGGAGCTTCAAAAGTTGCAGCCACTTCAAGCACTGGAAAGTTGGAGTTTTTGAAAAGTTTGGGTGTGGATTTAGCCATTGACTATACCAAGGAGAATATCGAAGACTTGCCCGAAAAATTCGACGTTGTGTACGACGCAATTGGGCAGTGTGATAAGGCAGTGAAAGTAGTAAAAGAAGGAGGCAGCGTCGTGGCGTTGACTGGTGCCGTGACGCCTCCTGGTTTCAGATTTGTGGTCACTTCAGATGGAGCTGTTCTAAAGAAACTAAACCCCTATATAGAAAGCGGAAAGGTGAAGCCGATCATCGATCCAAAAGGACCTTTTCCGTTCTCTCAGGTTGCAGAGGCCTTCTCTTATGTCGAAACCGGCCGAGCCACTGGAAAAGTAGTCATTCATCCAATCCCATGA 1167 49.44 MEAILASTPSQLKSPHQSLSSKLWPSFSLAFRETKRKTIRVAPATACSPASPTRLRVFATSQSAPASAVTSEVSSVPSEMKAWVYGEYGGVDVLKLDSNVSVPEVKEDQILIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSLVKELKEGDEVYGNINEKALEDLKQFGSLAEYTAVEEKLLALKPKNIDFFQAAGLPLAIETAYEGLEKLNFSAGKSILVLNGAGGVGSLVIQIAKHVFGASKVAATSSTGKLEFLKSLGVDLAIDYTKENIEDLPEKFDVVYDAIGQCDKAVKVVKEGGSVVALTGAVTPPGFRFVVTSDGAVLKKLNPYIESGKVKPIIDPKGPFPFSQVAEAFSYVETGRATGKVVIHPIP 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11674381 11676775 + Tan0005709.1 Tan04g1230 749634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1230 388 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 229 250 IPR002364 GO:0008270(InterPro)|GO:0016491(InterPro)
Tan04g1230 388 SUPERFAMILY GroES-like 77 234 IPR011032 -
Tan04g1230 388 CDD MDR_like_2 80 384 - -
Tan04g1230 388 Pfam Alcohol dehydrogenase GroES-like domain 107 199 IPR013154 -
Tan04g1230 388 Pfam Zinc-binding dehydrogenase 273 384 - -
Tan04g1230 388 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 72 388 IPR044626 GO:0016628(InterPro)
Tan04g1230 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 202 324 IPR036291 -
Tan04g1230 388 Gene3D - 221 335 - -
Tan04g1230 388 Gene3D - 87 384 - -
Tan04g1230 388 SMART PKS_ER_names_mod 89 384 IPR020843 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1230 K18980 - - csv:101215501 612.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0835 Tan-Chr1:8143215 Tan04g1230 Tan-Chr4:11674381 2.10E-34 dispersed
Tan03g0072 Tan-Chr3:10800426 Tan04g1230 Tan-Chr4:11674381 1.30E-57 dispersed
Tan03g0073 Tan-Chr3:11108202 Tan04g1230 Tan-Chr4:11674381 1.30E-57 dispersed
Tan04g1230 Tan-Chr4:11674381 Tan11g0613 Tan-Chr11:5435700 1.60E-120 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g707 . . . . . . Bma14g01793 . . . . . . . Sed01g1019 . Cpe01g01529 Bhi07g01725 Tan04g1230 Cmetu09g1229 Lac13g0203 Hepe10g1643 . . Cla05g02539 Cam05g2729 Cec05g2760 Cco05g2800 Clacu05g2730 Cmu05g2583 Cre05g2697 Cone13ag1038 . . . Lsi04g00547 Csa05g02339 Chy10g00906 Cme10g00520 . Blo11g00915 Bda07g01601 . . . . . . Cmo04g02843 . Cma04g01730 . Car04g01763 . . . . . . . . . . . . . . . . . . . Chy09g00330 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011084 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30