Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1244 ATGAAACTTTCCCTTGAAGATTCATCTTCTTGTACTCCGTTTCCCGGCCTCGGTGAAAATTCCTCCTTCCCACCGTCTCTCTTTTCTGTCTGTCGTAGATTTTCGGCGGTGCTCTTTGAAGGGATTTCTAGGCAGAGACAGAAAATGGGGCTTACGTTCACGAAGCTTTTCAGTCGGCTTTTTGCCAAGAAGGAGATGCGAATTCTGATGGTTGGTCTTGATGCGGCCGGTAAGACAACTATCCTTTACAAGCTCAAGCTTGGCGAGATCGTCACAACAATCCCTACCATCGGGTTTAATGTGGAGACTGTAGAGTACAAAAACATCAGCTTCACTGTCTGGGATGTTGGGGGTCAAGACAAGATCCGTCCCTTGTGGAGGCACTACTTCCAGAACACACAGGGTCTCATATTTGTTGTTGACAGCAATGATAGAGATCGAGTTGTTGAGGCCAGGGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTTCTGCTTGTGTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAGATCACTGATAAGCTGGGTCTCCACTCTCTCCGCCAGCGTCACTGGTACATTCAGAGCACTTGCGCCACCTCTGGAGAGGGACTTTATGAGGGGTTGGATTGGCTCTCCAACAACATTGCTAACAAGGCATAA 690 47.39 MKLSLEDSSSCTPFPGLGENSSFPPSLFSVCRRFSAVLFEGISRQRQKMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11790807 11796243 - Tan0004394.1 Tan04g1244 749648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1244 229 SMART rab_sub_5 66 228 - -
Tan04g1244 229 SMART sar_sub_1 49 225 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan04g1244 229 NCBIfam small GTP-binding protein domain 64 204 IPR005225 GO:0005525(InterPro)
Tan04g1244 229 Gene3D - 52 229 IPR027417 -
Tan04g1244 229 PRINTS GTP-binding SAR1 protein signature 122 147 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan04g1244 229 PRINTS GTP-binding SAR1 protein signature 167 188 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan04g1244 229 PRINTS GTP-binding SAR1 protein signature 67 90 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan04g1244 229 PRINTS GTP-binding SAR1 protein signature 95 119 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan04g1244 229 PANTHER ADP RIBOSYLATION FACTOR-RELATED 49 226 IPR024156 GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0006886(PANTHER)|GO:0016192(PANTHER)
Tan04g1244 229 ProSiteProfiles small GTPase Arf family profile. 59 225 - -
Tan04g1244 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 227 IPR027417 -
Tan04g1244 229 CDD Arf1_5_like 66 224 IPR045872 GO:0003924(InterPro)
Tan04g1244 229 SMART arf_sub_2 49 229 - -
Tan04g1244 229 Pfam ADP-ribosylation factor family 53 225 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan04g1244 229 FunFam ADP-ribosylation factor 1 49 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1244 K07937 - - sly:101247318 366.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2862 Tan-Chr2:96909724 Tan04g1244 Tan-Chr4:11790807 3.80E-97 dispersed
Tan04g1244 Tan-Chr4:11790807 Tan08g0812 Tan-Chr8:9346142 3.40E-62 dispersed
Tan01g0266 Tan-Chr1:2248549 Tan04g1244 Tan-Chr4:11790807 3.10E-27 transposed
Tan01g3438 Tan-Chr1:98968223 Tan04g1244 Tan-Chr4:11790807 9.80E-63 transposed
Tan02g1029 Tan-Chr2:15017289 Tan04g1244 Tan-Chr4:11790807 1.70E-24 transposed
Tan03g1593 Tan-Chr3:72160755 Tan04g1244 Tan-Chr4:11790807 3.20E-87 transposed
Tan06g0694 Tan-Chr6:5296786 Tan04g1244 Tan-Chr4:11790807 1.90E-100 transposed
Tan11g0638 Tan-Chr11:5631029 Tan04g1244 Tan-Chr4:11790807 2.50E-100 transposed
Tan02g2856 Tan-Chr2:96806829 Tan04g1244 Tan-Chr4:11790807 4.50E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g680 . Blo16g01160 . Bda11g01269 Bpe13g01466 . . . . Cmo18g00798 . Cma18g00794 . . Sed06g1643 . . Bhi07g01737 Tan04g1244 Cmetu03g0260 . . . . Cla05g02547 . . Cco05g2808 . . Cre05g2705 . . . . Lsi04g00556 Csa05g02332 Chy10g00900 . . . . Bda11g01269 . . . Bma06g00618 . Cmo04g02828 . Cma04g01736 . . . . . . . . . . . . . . . . . . . . . Chy09g00345 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297