Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1253 ATGAACCATCTCTTTGAACTGCCTGAACAGATTTGTTATGTGCAATGTGGAATCTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCAGCAGCTTGTCGATGGCGGTGACGGTGACGTGCGGGCACTGCTCAAGCCTCCTCTCTGTCAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTTTCTCACAATGTGCCCAAAGAAGCTTGTGGAGAAATGAATTCAGGGAAGTTCTTTGAGAGTTTCAAGAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTTTGACACCTCCTGTTGTAAACAAACCTCCTCAGAAAAGACAGCGCGCCCCATCAGCTTACAACTGTTTCATCAAGGATGAAATCAGAAGGCTGAAAGCTCAAAATCCTCAAATGACTCACAAGGAGGCCTTCAGAACAGCTGCAAAAAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACAAAGAGAGCTGTAATCAGATTGTTGGGGAAACTGGGATTTGGAACACTCAAATTCCTGAGGTTCACAAGGATGGAAAGTGTTTCCCAAGGCATTCAGTTTTGACATAA 606 43.4 MNHLFELPEQICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSFSHNVPKEACGEMNSGKFFESFKRSNLKFSEYEVEEGLIPLTPPVVNKPPQKRQRAPSAYNCFIKDEIRRLKAQNPQMTHKEAFRTAAKNWANFPPIQEKEDKESCNQIVGETGIWNTQIPEVHKDGKCFPRHSVLT 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11858790 11860270 - Tan0020896.1 Tan04g1253 749657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1253 201 Gene3D High mobility group box domain 109 176 IPR036910 -
Tan04g1253 201 FunFam Axial regulator YABBY 4 106 173 - -
Tan04g1253 201 Pfam YABBY protein 8 162 IPR006780 GO:0007275(InterPro)
Tan04g1253 201 CDD HMG-box_SF 119 165 - -
Tan04g1253 201 PANTHER PROTEIN YABBY 6-RELATED 8 171 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
Tan04g1253 201 SUPERFAMILY HMG-box 106 160 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1253 Tan-Chr4:11858790 Tan07g1851 Tan-Chr7:70058851 2.20E-33 dispersed
Tan02g2844 Tan-Chr2:96727826 Tan04g1253 Tan-Chr4:11858790 1.80E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27243 PF04690 YABBY 8.60E-58 CL0114 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1253 K25796 - csv:101211641 351.673