Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1253 ATGAACCATCTCTTTGAACTGCCTGAACAGATTTGTTATGTGCAATGTGGAATCTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCAGCAGCTTGTCGATGGCGGTGACGGTGACGTGCGGGCACTGCTCAAGCCTCCTCTCTGTCAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTTTCTCACAATGTGCCCAAAGAAGCTTGTGGAGAAATGAATTCAGGGAAGTTCTTTGAGAGTTTCAAGAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTTTGACACCTCCTGTTGTAAACAAACCTCCTCAGAAAAGACAGCGCGCCCCATCAGCTTACAACTGTTTCATCAAGGATGAAATCAGAAGGCTGAAAGCTCAAAATCCTCAAATGACTCACAAGGAGGCCTTCAGAACAGCTGCAAAAAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACAAAGAGAGCTGTAATCAGATTGTTGGGGAAACTGGGATTTGGAACACTCAAATTCCTGAGGTTCACAAGGATGGAAAGTGTTTCCCAAGGCATTCAGTTTTGACATAA 606 43.4 MNHLFELPEQICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSFSHNVPKEACGEMNSGKFFESFKRSNLKFSEYEVEEGLIPLTPPVVNKPPQKRQRAPSAYNCFIKDEIRRLKAQNPQMTHKEAFRTAAKNWANFPPIQEKEDKESCNQIVGETGIWNTQIPEVHKDGKCFPRHSVLT 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11858790 11860270 - Tan0020896.1 Tan04g1253 749657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1253 201 Gene3D High mobility group box domain 109 176 IPR036910 -
Tan04g1253 201 FunFam Axial regulator YABBY 4 106 173 - -
Tan04g1253 201 Pfam YABBY protein 8 162 IPR006780 GO:0007275(InterPro)
Tan04g1253 201 CDD HMG-box_SF 119 165 - -
Tan04g1253 201 PANTHER PROTEIN YABBY 6-RELATED 8 171 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
Tan04g1253 201 SUPERFAMILY HMG-box 106 160 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1253 K25796 - - csv:101211641 351.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1253 Tan-Chr4:11858790 Tan07g1851 Tan-Chr7:70058851 2.20E-33 dispersed
Tan02g2844 Tan-Chr2:96727826 Tan04g1253 Tan-Chr4:11858790 1.80E-32 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0975 . 1 178 C2C2-YABBY Transcription Factor Family AT1G69180 53.3 4.7e-46 181.8
Tan07g1851 . 79 237 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 9.8e-43 170.6
Tan01g2003 . 66 218 C2C2-YABBY Transcription Factor Family AT2G45190 54.9 4.5e-40 161.8
Tan05g0067 . 1 168 C2C2-YABBY Transcription Factor Family AT1G08465 69.0 1.7e-56 216.5
Tan05g0068 . 8 151 C2C2-YABBY Transcription Factor Family AT1G08465 68.0 4.7e-46 181.8
Tan07g1851 . 35 227 C2C2-YABBY Transcription Factor Family AT1G08465 53.1 4.4e-44 175.3
Tan09g1419 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 56.2 1.1e-42 170.6
Tan01g2003 . 17 195 C2C2-YABBY Transcription Factor Family AT1G08465 51.6 4.6e-41 165.2
Tan07g1851 . 46 236 C2C2-YABBY Transcription Factor Family AT4G00180 56.6 1.6e-50 196.8
Tan01g2003 . 27 216 C2C2-YABBY Transcription Factor Family AT4G00180 52.1 6.3e-47 184.9
Tan04g1253 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 54.0 8.5e-41 164.9
Tan09g1419 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 5.9e-64 241.1
Tan08g0251 . 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.1 1.4e-62 236.5
Tan05g0067 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 62.5 3.3e-51 198.7
Tan07g1851 . 35 199 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 1.5e-43 173.3
Tan05g0068 . 8 151 C2C2-YABBY Transcription Factor Family AT2G26580 63.2 6.3e-42 167.9
Tan01g2003 . 17 182 C2C2-YABBY Transcription Factor Family AT2G26580 51.2 6.5e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012058 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27243 PF04690 YABBY 8.60E-58 CL0114 Tan TF