Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1268 ATGGAAGAAATGTACGGGTTGCAATCCACGGCGGAGTATTCCGATAAGGCCTTGATGTCGCCGGAGAATCTGATTCTGCCGCCGGATTATCAGAGCCTTCTGGTCACCTCCGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAATTGCTTTCGGCGGCGGCCTCCGCGATATCCGAAGCCAACGAAGCAGCATCGATCACACCGGAAATTCAACGTGAAGAAGATATGGTGAACGTGATCAAAGCCAAAATTTCTTCTCATCCTACTTATCCTCGACTACTCGACGCCTATATTGACTGCCAAAAGGTAGGAGCGCCTCCGGAGATTGCACATTTGTTAGAGGGATTCCGTCAAGAAAGCGACCCTTGTAACCGTCACGCTGTCACCACGTGCTTAGGCGTCGATCCTGAGCTCGATGAATTTATGGAAACGTACTGCGATATGTTGGTGAAGTACAAATCAGATCTCAAAAGGCCTTTCGATGAAGCAACCACGTTCTTGAGTAAGATCGAACTGCAACTTAGTAGCCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGATGAAGGTGCTGTCTCGTCGGATGAAGAGTTGAGCGGAGGAGAGATGGAAGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTCTACGTAGATTTGGCAGTCATATTGGTACCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCAAGGCAAACTCTCCTTGAATGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGAGAATATGCAGTTTGAAGGAATGGATGGGCTTTCTTCTGGTAGACTCTTCAGAGAGGACTGA 978 47.85 MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVTSGEFRDRIPVFGSNELLSAAASAISEANEAASITPEIQREEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGFRQESDPCNRHAVTTCLGVDPELDEFMETYCDMLVKYKSDLKRPFDEATTFLSKIELQLSSLCNGAFSRSLSDEGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHIGTLKLEFSKKKKKGKLPKEARQTLLEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRLFRED 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12193149 12199896 + Tan0000738.1 Tan04g1268 749672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1268 325 Pfam ELK domain 221 242 IPR005539 GO:0003677(InterPro)
Tan04g1268 325 CDD homeodomain 253 305 IPR001356 GO:0003677(InterPro)
Tan04g1268 325 SMART HOX_1 243 308 IPR001356 GO:0003677(InterPro)
Tan04g1268 325 ProSiteProfiles ELK domain profile. 221 241 IPR005539 GO:0003677(InterPro)
Tan04g1268 325 SMART ELK_2 221 242 IPR005539 GO:0003677(InterPro)
Tan04g1268 325 SMART KNOX2_2 131 182 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan04g1268 325 Pfam KNOX2 domain 135 181 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan04g1268 325 FunFam Homeobox protein knotted-1-like 2 246 308 - -
Tan04g1268 325 Pfam KNOX1 domain 83 124 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan04g1268 325 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 121 313 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan04g1268 325 Pfam Homeobox KN domain 261 300 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan04g1268 325 ProSiteProfiles 'Homeobox' domain profile. 241 304 IPR001356 GO:0003677(InterPro)
Tan04g1268 325 Gene3D - 240 314 - -
Tan04g1268 325 SUPERFAMILY Homeodomain-like 242 317 IPR009057 -
Tan04g1268 325 ProSitePatterns 'Homeobox' domain signature. 279 302 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan04g1268 325 SMART KNOX1_2 81 125 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4652 Tan-Chr1:112415028 Tan04g1268 Tan-Chr4:12193149 2.70E-72 dispersed
Tan02g1669 Tan-Chr2:77897806 Tan04g1268 Tan-Chr4:12193149 2.30E-66 dispersed
Tan03g2274 Tan-Chr3:77008845 Tan04g1268 Tan-Chr4:12193149 1.10E-64 dispersed
Tan04g1268 Tan-Chr4:12193149 Tan07g1719 Tan-Chr7:68538804 2.50E-26 dispersed
Tan08g0667 Tan-Chr8:6634357 Tan04g1268 Tan-Chr4:12193149 6.10E-73 transposed
Tan09g2258 Tan-Chr9:72654040 Tan04g1268 Tan-Chr4:12193149 3.70E-86 transposed
Tan02g2094 Tan-Chr2:90515859 Tan04g1268 Tan-Chr4:12193149 4.50E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27244 PF03791 KNOX2 1.60E-24 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1268 - - - 0.0