Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1272 ATGGAGGTCGACGGCGGAGCAGTGCCGGCTGAACCGCGAAAATTCGCTCTACCGGTGGACTCCGAAAACAAATCCACCAAATTCAACATCTTCTCCGTCGCAGCGCCGCACATGCGAACGTTTCACCTCTCGTGGATTTCGTTCTGTGCCTGTTTCATTTCCAGTTTCGCAGCGGCGCCACTTCTGCCGGTGATCCGCGACAACCTCGACCTGACCGACACCGACATTGGCAACGCCGGAATCGCGTCGGTGTCCGGCGCCGTCTTCGCCCGAATCATGATGGGGTCCGCCTGCGACTTGGTCGGACCACGTCTGGCCTCCGCCTCACTCATCTTGATAACCTCACCCGCAGTTTACCTAACTTCCATAGCCTCCTCCCCTGCTTCGTTCTTCCTCGTCCGTTTCTTCACCGGCTTCTCCCTCGCCACATTCGTGTCGACCCAATTCTGGATGAGCTCGATGTTCTCCTCCACCGTCGTCGGCACAGCCAACGGCGTCGCTGGCGGGTGGGGGAATCTGGGAGGCGGCGCAACGCAACTCATCATGCCGTACGTCTTCGCCATAATCGAACACATCGGCGCGACGAAATTCACAGCGTGGAGAATCGCTTTCTTCATCCCAGCGTTATTCCAAACGATGTCGGCGTTCGCCGTTCTGCTGAAAACAGGGGAGAAGGCGAAAGACAAATTCTCGAAAGTATTTTACGGGGGAGCGAGTAATTACAGGGGGTGGATATTGGCATTGACATATGGGTATTGTTTCGGAGTGGAATTGACGATCGACAATGTAATAGCGAACTATTTTTACGATCGATTCGATCTGAATCTGCATACGGCGGGGATAATAGCGGCGAGTTTTGGACTGGCGAATATATTTTCGCGGCCGTACGGAGGGATATTGTCAGACGTGGTGGCGAGGAGATATGGGATGAGAGGGAGGCTGTGGGCGCTGTGGGTGGTGCAGACATTGGGGGGAGTTTTCTGTGTGATTCTTGGATTGGTTGATTCATTGAGTGTTTCCATTGTGATTATGATCGTTTTCTCCCTCTTTGTTCAAGCCGCTTGTGGACTCACTTTTGGTGTCGTTCCTTTCGTCTCTCGGAGGTCGTTGGGAGTGATATCGGGGATGACGGGAGGGGGCGGGAACGTGGGGTCGGTATTGACACAGTTGATATTTTTCAGAGGCACAAAATACACAAAAGAAAGAGGAATAAGTTTAATGGGAGTGATGATAATTGGTTGCACTCTCCCAATTGTGTTCATACATTTCCCTCAATGGGGCGGGATGTTGTGTGGGCCATCCTCCAAAATTGCTTCTGAGGAAGACTATTATTTGTCCGAGTGGACGGCTGAAGAAAGGGCCAAAGGGTTCCATTTGGCTAGCATGAAGTTTGCTGAAAATAGATCACACAGATTGACAAATCTACCCTTAAATCCTGGGATGACATCGCCAATGCTTTTTTGA 1464 51.84 MEVDGGAVPAEPRKFALPVDSENKSTKFNIFSVAAPHMRTFHLSWISFCACFISSFAAAPLLPVIRDNLDLTDTDIGNAGIASVSGAVFARIMMGSACDLVGPRLASASLILITSPAVYLTSIASSPASFFLVRFFTGFSLATFVSTQFWMSSMFSSTVVGTANGVAGGWGNLGGGATQLIMPYVFAIIEHIGATKFTAWRIAFFIPALFQTMSAFAVLLKTGEKAKDKFSKVFYGGASNYRGWILALTYGYCFGVELTIDNVIANYFYDRFDLNLHTAGIIAASFGLANIFSRPYGGILSDVVARRYGMRGRLWALWVVQTLGGVFCVILGLVDSLSVSIVIMIVFSLFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGSVLTQLIFFRGTKYTKERGISLMGVMIIGCTLPIVFIHFPQWGGMLCGPSSKIASEEDYYLSEWTAEERAKGFHLASMKFAENRSHRLTNLPLNPGMTSPMLF 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12235256 12239242 - Tan0000829.1 Tan04g1272 749676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1272 487 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 12 469 IPR044772 GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Tan04g1272 487 Gene3D MFS general substrate transporter like domains 228 426 IPR036259 -
Tan04g1272 487 CDD MFS_NRT2_like 41 420 IPR044772 GO:0015112(InterPro)
Tan04g1272 487 FunFam Nitrate transporter 2.1 228 428 - -
Tan04g1272 487 SUPERFAMILY MFS general substrate transporter 35 421 IPR036259 -
Tan04g1272 487 Gene3D MFS general substrate transporter like domains 34 227 IPR036259 -
Tan04g1272 487 FunFam High affinity nitrate transporter 2.5 33 227 - -
Tan04g1272 487 Pfam Major Facilitator Superfamily 45 387 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2640 Tan-Chr1:41742968 Tan04g1272 Tan-Chr4:12235256 2.10E-163 dispersed
Tan01g2641 Tan-Chr1:41765865 Tan04g1272 Tan-Chr4:12235256 1.30E-160 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1272 K02575 - csv:101212365 775.393