Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1280 ATGGCTTCAAACGCCGTCGTTTCATACTCCATCTTTCTACTGATATTCACAGCAATCTCCGTCGACGCTTCTAATCAAACAATGATTCCGATGGAATGTTCAAGCGTAAAGAAATGCGACGCCTCGTTATATCGCGTCAACGGTGGGCTGCAGGCGAAGAGCGAAATCGCCGCCGCGTACTCCGTCAATCCGTCGCAGATTCAGCCGATCGAGCGCGGCGGCGTTCGAGACGACCTTATTACGGCGCCATGTTCGTGCGAACCGGCCGACGGCGTGTCGGGAACAGCGTATTTTCACGACACGTCGTTCAGAGTGAGAATCGGGGACTCCTTGAGCGACGTGTCGAATCAAAATTACAGCGGACAGGTGTGGATTTCCGGCGATCCGGTGCTTATTCCTGGAAACGATTTTGGTGTGAAATTGTTGTGTGGATGTGTTGAAGACGAGTCTAAGATTGTGGTGACTTACACGGTTCAGTCGCATGATACGTTATCGCAAATCGCGAGTTTGTTATGGGCTGATGCGAGTGAAATTTATAATTTGAATAGAAAATTGATTCATGACCCTGGCTTCATTGTACCGGGTTGGGTTTTGTTTGTGCCTATGCCCAAGAATGCATATCAAAGTACAAAAGACGTTTCAGGATTTGAATCGGAAAAAACTGTGATTTTTACCATAGAGGAGATCGAAGAGGCTACGGCTAACTTTGATGAATCTCGCAAGATCGGAGAGGGTGGATATGGAACTGTTTACTATGGAGTGTTAAATGAACAGGAGGTTGCAATTAAGAAAATGAAATCAAATAAATCCAAAGAGTTCTTCGCAGAATTAAAAGTCCTATGCAGGATCCATCATATTAATGTGGTTGAGCTTCTAGGATATGCTAGTGGAGATGACCATTTGTATTTAGTTTATGAATATGTTCAAAATGGATCGCTTAGTGACCATCTCCATGATCCACTGAAAAAAGGGTACCAGCCTCTAACATGGACAACGAGAACGCAGATAGCTTTAGATGCAGCAAAGGGTATTGAGTACATTCACGACCACACTAAAGTACGGTATGTTCATCGTGACATCAAGACAAGTAATATCCTCCTTGATGAAAGCCTTGGAGCAAAGGTTGCAGATTTCGGACTAGCAAAGTTAGTCGGACGAAGCAACGACGACGAACTCGTAGCAACCCGACTTGTCGGTACACCGGGCTACCTTCCTCCAGAATCCGTAAAAGAGCTTCAAGTGACCCCCAAAACGGACGTATTTGCATTTGGAGTGGTTTTGGCGGAGCTAATTACAGGAAGAAGAGCACTGATTCGAGACAACCAAGAGCCAAAGAGAACCAAATCATTAATCTCGCTTATTTATACGATATTCCAAGGGGAAGACTCTGAGGCTGCTCTGGAAGCTGTCGTGGATGGAAATTTGCACGGAAGCTACCCGCTGGACGATATTTTCAAGATGGGGGAGATAGCGGCGTGGTGTTTGAACGAAGATCCGGTGGGGAGACCGGAGATGCGTGAAATTGTTGCTTTGCTGTCGCAGCTTATGACATCCGCCGTCGAGTGGGAGGCCTCACTCGGCGGCAACAGCCAAGTTTTCAGCGGCCTCTTTAGTGGAAGATGA 1623 46.58 MASNAVVSYSIFLLIFTAISVDASNQTMIPMECSSVKKCDASLYRVNGGLQAKSEIAAAYSVNPSQIQPIERGGVRDDLITAPCSCEPADGVSGTAYFHDTSFRVRIGDSLSDVSNQNYSGQVWISGDPVLIPGNDFGVKLLCGCVEDESKIVVTYTVQSHDTLSQIASLLWADASEIYNLNRKLIHDPGFIVPGWVLFVPMPKNAYQSTKDVSGFESEKTVIFTIEEIEEATANFDESRKIGEGGYGTVYYGVLNEQEVAIKKMKSNKSKEFFAELKVLCRIHHINVVELLGYASGDDHLYLVYEYVQNGSLSDHLHDPLKKGYQPLTWTTRTQIALDAAKGIEYIHDHTKVRYVHRDIKTSNILLDESLGAKVADFGLAKLVGRSNDDELVATRLVGTPGYLPPESVKELQVTPKTDVFAFGVVLAELITGRRALIRDNQEPKRTKSLISLIYTIFQGEDSEAALEAVVDGNLHGSYPLDDIFKMGEIAAWCLNEDPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFSGR 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12354703 12364010 - Tan0015510.1 Tan04g1280 749684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1280 540 ProSiteProfiles LysM domain profile. 154 200 IPR018392 -
Tan04g1280 540 Gene3D Transferase(Phosphotransferase) domain 1 308 526 - -
Tan04g1280 540 SUPERFAMILY Protein kinase-like (PK-like) 218 512 IPR011009 -
Tan04g1280 540 SMART LysM_2 155 201 IPR018392 -
Tan04g1280 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g1280 540 FunFam PTI1-like tyrosine-protein kinase 3 308 526 - -
Tan04g1280 540 ProSiteProfiles Protein kinase domain profile. 236 516 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1280 540 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 12 207 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Tan04g1280 540 Gene3D LysM domain 146 214 IPR036779 -
Tan04g1280 540 Pfam LysM domain 156 201 IPR018392 -
Tan04g1280 540 Gene3D Phosphorylase Kinase; domain 1 215 307 - -
Tan04g1280 540 SUPERFAMILY LysM domain 154 202 IPR036779 -
Tan04g1280 540 SMART serkin_6 236 516 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1280 540 Pfam Protein kinase domain 237 509 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1280 540 CDD LysM 154 200 IPR018392 -
Tan04g1280 540 FunFam Kinase family protein 212 307 - -
Tan04g1280 540 ProSitePatterns Protein kinases ATP-binding region signature. 242 264 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1280 Tan-Chr4:12354703 Tan06g1301 Tan-Chr6:15269416 4.60E-57 dispersed
Tan02g0372 Tan-Chr2:3162581 Tan04g1280 Tan-Chr4:12354703 1.80E-78 transposed
Tan04g0615 Tan-Chr4:5188484 Tan04g1280 Tan-Chr4:12354703 3.00E-35 transposed
Tan04g2688 Tan-Chr4:86351858 Tan04g1280 Tan-Chr4:12354703 5.10E-98 transposed
Tan05g0229 Tan-Chr5:1755437 Tan04g1280 Tan-Chr4:12354703 1.10E-34 transposed
Tan02g2842 Tan-Chr2:96697744 Tan04g1280 Tan-Chr4:12354703 2.30E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67456 PF00069 Pkinase 7.70E-51 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1280 - - - 0.0