Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1306 ATGAAGCATGCCAAAACCAAAAGCCAAAACCACCTGACAAACACTTCGTTCTTGACGTGTACGTACAAGAGGTTCCAAGTTTATCGATGCTGGTCACTGGGCAGTGATCACTCCGATCTCCTCGACTTCTGCAAATTTCCCTCGAATTCACTCAATCAATCAATGGCTTCAATCCCTGCCAGCCCTCGCACCGTCGAAGACATCTTCAAGGATTACAGCGCTCGACGTACGGGCCTTGTGCGAGCTCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTACGGACACCCGAATGAGTCTTGGGAGGTGACTTTGCCTGCCGAGGAAGTTCCATCTGAGCTCCCTGAACCTGCGTTGGGGATCAATTTTGCAAGAGATGGGATGAAGCGCAGAGACTGGCTTTCATTGGTGGCTGTGCACAGTGATTGTTGGTTGCTTTCTGTGGCGTTTTACTTTGGTGCTCGACTCAACCGCAATGAGCGGAAGCGACTGTTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGACAGTGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCAATTAGGAACAGCAATCCAAAGCTGCTCGATGAGAGTTATGGAGAGGATGAGGATGAGCATGGTGATACACTCTGTGGGAGCTGTGGAGGGAACTACAATGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCTGCCAAGGCAGAAAATATCAAGCAGTACAAATGCCCTTCTTGCAGCACAAAGAGAGGAAAACCATAG 888 47.52 MKHAKTKSQNHLTNTSFLTCTYKRFQVYRCWSLGSDHSDLLDFCKFPSNSLNQSMASIPASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLDESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGKP 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13043317 13062068 + Tan0013577.1 Tan04g1306 749710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1306 295 SMART PHD_3 241 289 IPR001965 -
Tan04g1306 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 290 IPR013083 -
Tan04g1306 295 SUPERFAMILY FYVE/PHD zinc finger 230 293 IPR011011 -
Tan04g1306 295 FunFam PHD finger alfin-like protein 234 290 - -
Tan04g1306 295 CDD PHD_AL_plant 241 291 IPR044104 -
Tan04g1306 295 MobiDBLite consensus disorder prediction 203 224 - -
Tan04g1306 295 MobiDBLite consensus disorder prediction 195 232 - -
Tan04g1306 295 Pfam PHD-finger 242 288 IPR019787 -
Tan04g1306 295 ProSitePatterns Zinc finger PHD-type signature. 242 288 IPR019786 -
Tan04g1306 295 PANTHER CPG BINDING PROTEIN 61 294 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Tan04g1306 295 ProSiteProfiles Zinc finger PHD-type profile. 239 291 IPR019787 -
Tan04g1306 295 Pfam Alfin 64 188 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1306 Tan-Chr4:13043317 Tan08g2138 Tan-Chr8:73212437 7.40E-110 dispersed
Tan04g1306 Tan-Chr4:13043317 Tan02g1591 Tan-Chr2:73711944 8.20E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27246 PF12165 Alfin 8.40E-68 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1306 K26274 - csv:101211934 490.345