Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1306 ATGAAGCATGCCAAAACCAAAAGCCAAAACCACCTGACAAACACTTCGTTCTTGACGTGTACGTACAAGAGGTTCCAAGTTTATCGATGCTGGTCACTGGGCAGTGATCACTCCGATCTCCTCGACTTCTGCAAATTTCCCTCGAATTCACTCAATCAATCAATGGCTTCAATCCCTGCCAGCCCTCGCACCGTCGAAGACATCTTCAAGGATTACAGCGCTCGACGTACGGGCCTTGTGCGAGCTCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTACGGACACCCGAATGAGTCTTGGGAGGTGACTTTGCCTGCCGAGGAAGTTCCATCTGAGCTCCCTGAACCTGCGTTGGGGATCAATTTTGCAAGAGATGGGATGAAGCGCAGAGACTGGCTTTCATTGGTGGCTGTGCACAGTGATTGTTGGTTGCTTTCTGTGGCGTTTTACTTTGGTGCTCGACTCAACCGCAATGAGCGGAAGCGACTGTTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGACAGTGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCAATTAGGAACAGCAATCCAAAGCTGCTCGATGAGAGTTATGGAGAGGATGAGGATGAGCATGGTGATACACTCTGTGGGAGCTGTGGAGGGAACTACAATGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCTGCCAAGGCAGAAAATATCAAGCAGTACAAATGCCCTTCTTGCAGCACAAAGAGAGGAAAACCATAG 888 47.52 MKHAKTKSQNHLTNTSFLTCTYKRFQVYRCWSLGSDHSDLLDFCKFPSNSLNQSMASIPASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLDESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGKP 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13043317 13062068 + Tan0013577.1 Tan04g1306 749710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1306 295 SMART PHD_3 241 289 IPR001965 -
Tan04g1306 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 290 IPR013083 -
Tan04g1306 295 SUPERFAMILY FYVE/PHD zinc finger 230 293 IPR011011 -
Tan04g1306 295 FunFam PHD finger alfin-like protein 234 290 - -
Tan04g1306 295 CDD PHD_AL_plant 241 291 IPR044104 -
Tan04g1306 295 MobiDBLite consensus disorder prediction 203 224 - -
Tan04g1306 295 MobiDBLite consensus disorder prediction 195 232 - -
Tan04g1306 295 Pfam PHD-finger 242 288 IPR019787 -
Tan04g1306 295 ProSitePatterns Zinc finger PHD-type signature. 242 288 IPR019786 -
Tan04g1306 295 PANTHER CPG BINDING PROTEIN 61 294 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Tan04g1306 295 ProSiteProfiles Zinc finger PHD-type profile. 239 291 IPR019787 -
Tan04g1306 295 Pfam Alfin 64 188 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1306 K26274 - - csv:101211934 490.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1306 Tan-Chr4:13043317 Tan08g2138 Tan-Chr8:73212437 7.40E-110 dispersed
Tan04g1306 Tan-Chr4:13043317 Tan02g1591 Tan-Chr2:73711944 8.20E-93 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g1497 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.3 6.1e-113 404.4
Tan01g1498 . 1 253 Alfin-like Transcription Factor Family AT1G14510 83.0 8.9e-112 400.6
Tan08g0036 . 9 249 Alfin-like Transcription Factor Family AT1G14510 69.8 4.4e-95 345.1
Tan02g1591 . 9 251 Alfin-like Transcription Factor Family AT1G14510 69.5 1.7e-94 343.2
Tan06g0145 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 3.5e-92 335.5
Tan02g1592 . 9 231 Alfin-like Transcription Factor Family AT1G14510 66.9 8.6e-91 330.9
Tan04g1306 . 62 292 Alfin-like Transcription Factor Family AT1G14510 60.2 1.7e-78 290.0
Tan08g2138 . 16 245 Alfin-like Transcription Factor Family AT1G14510 60.8 1.7e-78 290.0
Tan08g2139 . 8 237 Alfin-like Transcription Factor Family AT1G14510 60.8 1.7e-78 290.0
Tan08g0036 . 1 251 Alfin-like Transcription Factor Family AT5G26210 74.8 4.9e-110 394.8
Tan02g1591 . 1 253 Alfin-like Transcription Factor Family AT5G26210 73.6 4.6e-108 388.3
Tan02g1592 . 1 233 Alfin-like Transcription Factor Family AT5G26210 70.1 2.9e-102 369.0
Tan06g0145 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.7 5.6e-98 354.8
Tan01g1497 . 9 254 Alfin-like Transcription Factor Family AT5G26210 73.3 7.1e-93 337.8
Tan01g1498 . 9 255 Alfin-like Transcription Factor Family AT5G26210 73.0 1.2e-92 337.0
Tan04g1306 . 61 294 Alfin-like Transcription Factor Family AT5G26210 59.1 3.7e-81 298.9
Tan08g2138 . 16 247 Alfin-like Transcription Factor Family AT5G26210 58.9 4.1e-80 295.4
Tan08g2139 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.9 4.1e-80 295.4
Tan08g0036 . 1 251 Alfin-like Transcription Factor Family AT3G42790 71.0 1.8e-101 366.3
Tan02g1592 . 1 233 Alfin-like Transcription Factor Family AT3G42790 70.3 1.3e-99 360.1
Tan02g1591 . 1 253 Alfin-like Transcription Factor Family AT3G42790 69.8 1.7e-99 359.8
Tan06g0145 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 5.2e-96 348.2
Tan01g1498 . 9 255 Alfin-like Transcription Factor Family AT3G42790 70.0 2.7e-89 325.9
Tan01g1497 . 9 254 Alfin-like Transcription Factor Family AT3G42790 70.3 6.1e-89 324.7
Tan04g1306 . 61 294 Alfin-like Transcription Factor Family AT3G42790 60.7 7.3e-82 301.2
Tan08g2138 . 16 247 Alfin-like Transcription Factor Family AT3G42790 58.8 5.7e-79 291.6
Tan08g2139 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.8 5.7e-79 291.6
Tan04g1306 . 55 294 Alfin-like Transcription Factor Family AT5G05610 77.2 1.1e-111 400.2
Tan08g2138 . 9 248 Alfin-like Transcription Factor Family AT5G05610 75.9 2.6e-108 389.0
Tan08g2139 . 1 240 Alfin-like Transcription Factor Family AT5G05610 75.9 2.6e-108 389.0
Tan02g1591 . 8 253 Alfin-like Transcription Factor Family AT5G05610 66.3 1.4e-93 340.1
Tan06g0145 . 10 250 Alfin-like Transcription Factor Family AT5G05610 66.1 4.4e-92 335.1
Tan08g0036 . 8 251 Alfin-like Transcription Factor Family AT5G05610 63.7 2.4e-90 329.3
Tan02g1592 . 8 233 Alfin-like Transcription Factor Family AT5G05610 64.2 5.9e-89 324.7
Tan01g1497 . 9 254 Alfin-like Transcription Factor Family AT5G05610 61.4 4.8e-83 305.1
Tan01g1498 . 9 255 Alfin-like Transcription Factor Family AT5G05610 61.1 8.3e-83 304.3
Tan04g1306 . 97 294 Alfin-like Transcription Factor Family AT3G11200 80.1 4.1e-95 345.1
Tan08g2138 . 51 248 Alfin-like Transcription Factor Family AT3G11200 77.7 9.7e-89 323.9
Tan08g2139 . 43 240 Alfin-like Transcription Factor Family AT3G11200 77.7 9.7e-89 323.9
Tan02g1591 . 44 253 Alfin-like Transcription Factor Family AT3G11200 65.9 1.9e-76 283.1
Tan06g0145 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.4 5.2e-74 275.0
Tan08g0036 . 44 251 Alfin-like Transcription Factor Family AT3G11200 64.4 5.2e-74 275.0
Tan02g1592 . 44 233 Alfin-like Transcription Factor Family AT3G11200 63.1 5.7e-73 271.6
Tan01g1497 . 44 254 Alfin-like Transcription Factor Family AT3G11200 62.6 8.6e-69 257.7
Tan01g1498 . 44 255 Alfin-like Transcription Factor Family AT3G11200 61.8 7.3e-68 254.6
Tan01g1497 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.2e-77 285.4
Tan01g1498 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.2e-77 285.4
Tan08g0036 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 9.7e-66 247.7
Tan02g1591 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 1.4e-64 243.8
Tan02g1592 . 1 145 Alfin-like Transcription Factor Family AT2G02470 80.0 1.5e-63 240.4
Tan06g0145 . 10 160 Alfin-like Transcription Factor Family AT2G02470 76.2 1.7e-62 236.9
Tan04g1306 . 62 209 Alfin-like Transcription Factor Family AT2G02470 68.9 2.9e-54 209.5
Tan08g2138 . 16 175 Alfin-like Transcription Factor Family AT2G02470 64.2 1.1e-53 207.6
Tan08g2139 . 8 167 Alfin-like Transcription Factor Family AT2G02470 64.2 1.1e-53 207.6
Tan02g1591 . 1 167 Alfin-like Transcription Factor Family AT5G20510 76.2 3.0e-72 268.9
Tan08g0036 . 1 164 Alfin-like Transcription Factor Family AT5G20510 76.4 5.2e-72 268.1
Tan06g0145 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.8 1.6e-68 256.5
Tan02g1592 . 1 149 Alfin-like Transcription Factor Family AT5G20510 79.3 2.0e-68 256.1
Tan01g1498 . 3 168 Alfin-like Transcription Factor Family AT5G20510 70.2 2.3e-64 242.7
Tan01g1497 . 3 172 Alfin-like Transcription Factor Family AT5G20510 68.6 4.0e-64 241.9
Tan04g1306 . 61 211 Alfin-like Transcription Factor Family AT5G20510 63.7 2.4e-53 206.1
Tan08g2138 . 15 165 Alfin-like Transcription Factor Family AT5G20510 62.4 1.3e-51 200.3
Tan08g2139 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.3e-51 200.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27246 PF12165 Alfin 8.40E-68 No_clan Tan TF