Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1310 ATGTGCAGTGGCTCAAAGAATAAAGTTGCTTCCTCGAATTCCGCCATGGAAACCAAGTTTCAGAAGCTTAACGATGGTGTTTTTTTCTCTGCGAGTTCAATTTTGCTTGAACTATCGGCCTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAAGGGTTTGGATGTTGATGAACCGAGCTGCTGGTATGGAAGAGGAATTGGATCAAAGAAGATGGGTTTTGAAGAAAGAACACCACTGATGATTGCTGCCATGTTTGGAAGCTCTAAGGTTGTCAAGCACTTAATTGAGACAGGCAAAGTTGATGTCAACAGGGCTTGTGGTTCAGATATGGCCACTGCCCTTCACTGTGCCACTGCTGGGGGCTCTGGTTCCTCCCTTGAGACCATCAAGCTCTTGCTCGACGGATCTGCCAACTTCGATTGTGTCGATGCTAAGGGGAGAAAACCTGTTGATTTGATTGTTTCAGCTTGCAGGATGGTGTGTAATTCAGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGGTTATCTGAGCCTTTGCCTTGAAGAAGACCAGCAGAAGATCACAGCTGCCCAATCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCTGTTGATGTATCGCTCCCCGACATCAACAGCGGGATATACGGTACCGATGATTTCAGGATGTATACCTTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCACACGATTGGACTGAGTGCCCTTTTGTTCATCCTGGCGAGAACGCTAGGCGCAGAGACCCCAGGAAATACCCATATAGTTGCGTCCCATGCCCCGAATTCCGTAAGGGGGCTTGCCCAAAGGGAGATTCCTGTGAGTATGCACATGGTGTCTTTGAGTCCTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGCAAGGATGAGACTGGCTGCACAAGGAAGGTCTGCTTCTTTGCTCACAAACCTGAAGAGTTGCGCCCTGTATATGCTTCAACAGGCTCAGGCATGCCTTCACCCAGGTCTCTTTCGAGCAGCGCAGCGGATATGTCTACCATGAGCCCATTGGCTCTTGCTTCATCATCGTTGTCGTTGCCGACTACTTCGACGCCTCCCATGTCTCCTTTAGCATCCGTGTCTTCCCCTAAGAATGGAAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTCTGCAACTCCCTGGTAGTCGGTTAAAGACCACCGTGAGTGCAAGAGATTTGGATTTAGAGATGGAATTGCTCGGGTTGGAAAAGAACGCGAGCCAATTACAACATCAACAGCAGTTGATCGACGAGATATCCCGGCTCTCCTCTCCTTCTTACTGGAGTACAGATGTAAGCAGGAGTGCAGAGTTGAAGCCATCAAACCTTGATGACATGTTTGGATCATTGGATTCTTCCTTGTTGTCTCAGTTGCAGGGCACCTCGCTGAAAACACCAATCTCATCGCAGGTTCAATCTCCGACCGGGCTGCAGATGCACCAAAACATGAACCAACTCCGTGCAAGTTACCCGGCTAACTTATCATCCTCACCTGTAAAGAAACCCTCCTCTTTTGGCTTTGACTCATCAAGTGCAGTGGCAGCTGCCGTGATGAACTCGAGGTCTGCTGCCTTTGCAAAGCGAAGCCAAAGTTTCATCGACCGAGCTGCAGTTAGTCGTCTTCCCGGATTTACCACAGTTGCAAACTCTGCAACTACAATGTCTTCCCATCTCTCAGATTGGAACTCGCCTGATGGAAAACTAGATTGGGGAATGCACGGCAACGATCTCAACAAACTCAAGAAATCTGCTTCGTTTGGAATCCGAAACAACGGCATACGAGCTCCCACCTTCGCACCATCAGCAGGGGAGCCTGACGTCTCTTGGGTTAACTCCTTGGTTAAAGATGTTCCCTCCGACAGCTTCGAGCTGTTTGGTGCCGAGAAGCGGCAATACAAACTCAAAAGAGAAATTAACGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2061 48.91 MCSGSKNKVASSNSAMETKFQKLNDGVFFSASSILLELSASDDVEGFKREVEEKGLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMFGSSKVVKHLIETGKVDVNRACGSDMATALHCATAGGSGSSLETIKLLLDGSANFDCVDAKGRKPVDLIVSACRMVCNSGRKAMEMLLRGDGMAGEGYLSLCLEEDQQKITAAQSAKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSGMPSPRSLSSSAADMSTMSPLALASSSLSLPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKTTVSARDLDLEMELLGLEKNASQLQHQQQLIDEISRLSSPSYWSTDVSRSAELKPSNLDDMFGSLDSSLLSQLQGTSLKTPISSQVQSPTGLQMHQNMNQLRASYPANLSSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVSRLPGFTTVANSATTMSSHLSDWNSPDGKLDWGMHGNDLNKLKKSASFGIRNNGIRAPTFAPSAGEPDVSWVNSLVKDVPSDSFELFGAEKRQYKLKREINEMLPSWMEQQLYAEQEQIVA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13503662 13508199 + Tan0001856.1 Tan04g1310 749714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1310 686 PANTHER UNKEMPT FAMILY MEMBER 72 643 IPR045234 -
Tan04g1310 686 ProSiteProfiles Ankyrin repeat region circular profile. 77 101 - -
Tan04g1310 686 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872(InterPro)
Tan04g1310 686 SMART ANK_2a 112 144 IPR002110 GO:0005515(InterPro)
Tan04g1310 686 SMART ANK_2a 77 107 IPR002110 GO:0005515(InterPro)
Tan04g1310 686 Pfam Ankyrin repeats (3 copies) 77 143 IPR002110 GO:0005515(InterPro)
Tan04g1310 686 SMART c3hfinal6 270 296 IPR000571 GO:0046872(InterPro)
Tan04g1310 686 SMART c3hfinal6 305 328 IPR000571 GO:0046872(InterPro)
Tan04g1310 686 Gene3D - 271 333 - -
Tan04g1310 686 Gene3D - 3 163 IPR036770 -
Tan04g1310 686 SUPERFAMILY Ankyrin repeat 43 154 IPR036770 -
Tan04g1310 686 MobiDBLite consensus disorder prediction 334 353 - -
Tan04g1310 686 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Tan04g1310 686 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 295 IPR000571 GO:0046872(InterPro)
Tan04g1310 686 ProSiteProfiles Ankyrin repeat profile. 77 101 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1310 Tan-Chr4:13503662 Tan05g0488 Tan-Chr5:3363608 2.50E-201 dispersed
Tan04g1310 Tan-Chr4:13503662 Tan09g1181 Tan-Chr9:64142276 3.50E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27247 PF12796 Ank_2 2.00E-07 CL0465 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1310 - - - 0.0