Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1322 ATGTGCGCAGTTGCAGTGCCGAAGACGACGACCAGTACTACACCATTATTCTCATCTCCAAAGATTGCTTCACTACTCTACAAGTCTTCGCTGAATTATTGTTCGTCTCCTTCTTCTTCTTCTTCTTCTTCGCCAAGATCGGTGTCGAGTCCTAGGAAGCTTCATGTTTCTGCATCTTCGCCGTCGCCGTCGCCATCATCGACGCCGCAACTTCCGCCTTCTGTTTCGCCATTGGCTGTTGTTGATACGGTTTTGAAGAGGAAGAGGCCGGCGAGAATCAACGTTCCGCCGCTGATTGCGCCGTCGATTGGTTTTGGATTTGGATTTGAGCAGCCGGAGGTGATGGAGGAGGAAGGGGAAGGATATTCGGTTTATTGTAAAAGAGGAAGAAGACGCACCGGTATGGAGGATCGATTCTCGGCCAGCGTTGGAATTCAAGGAGATTCTCGACAGGCTTTCTTCGGAGTTTACGACGGGCACGGCGGAGCAAAAGTGGCGGAAATCGCAGCGAAAAGAATGAGCAAGAACGTGATCGATCAAGTAAGGAGAAGAACCGATTCGGAACTCGAGGAAGCAATCAGAGACGGCTATCTCGCCACCGATCGGGAAGTATTGGGGGAAGGCGTCGGCGGCGGCGCCTGTTGCGTCGCCGCATTGATACGGAACGGAAATCTCGCAGTCTCGAACGTCGGCGATTGTCGCGCCGTGTTGAGCCGAAGAGGCAAAGCCGAAGCCCTAACCTCCGATCACCGTCCGTCGAGAGAAGACGAGAGAAACCGGATCGAAAATTCGGGCGGTTATGTAGATTGTTGCCGTGGTGCGTGGAGAGTTCAAGGAACGTTGGCCGTATCGCGAGCCATTGGAGATGAGCATCTGAAACAGTGGGTGATATCGGAGCCGGAGACGAAAGTGGTGAAGATTGAGGACGATTGTGATTTCTTGATTCTTGCTTCTGATGGTCTTTGGGACAAGGTTACAAATCAGGAAGCAGTAGACATAGTAGAGAGTTTATGCGGCGGAGAGATGGAGAAGCGAGAGCTATTCTCAGCTTGCAAAGAGCTAGCCGCGTTGTCAACATCACGAGGCTCAGTCGACGATACTAGTGTTATGATCATCAAACTGCCTTCATTCCTCTGA 1137 51.63 MCAVAVPKTTTSTTPLFSSPKIASLLYKSSLNYCSSPSSSSSSSPRSVSSPRKLHVSASSPSPSPSSTPQLPPSVSPLAVVDTVLKRKRPARINVPPLIAPSIGFGFGFEQPEVMEEEGEGYSVYCKRGRRRTGMEDRFSASVGIQGDSRQAFFGVYDGHGGAKVAEIAAKRMSKNVIDQVRRRTDSELEEAIRDGYLATDREVLGEGVGGGACCVAALIRNGNLAVSNVGDCRAVLSRRGKAEALTSDHRPSREDERNRIENSGGYVDCCRGAWRVQGTLAVSRAIGDEHLKQWVISEPETKVVKIEDDCDFLILASDGLWDKVTNQEAVDIVESLCGGEMEKRELFSACKELAALSTSRGSVDDTSVMIIKLPSFL 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13953942 13956658 + Tan0007510.1 Tan04g1322 749726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1322 378 ProSitePatterns PPM-type phosphatase domain signature. 153 161 IPR000222 GO:0043169(InterPro)
Tan04g1322 378 MobiDBLite consensus disorder prediction 33 75 - -
Tan04g1322 378 MobiDBLite consensus disorder prediction 33 64 - -
Tan04g1322 378 Pfam Protein phosphatase 2C 126 366 IPR001932 -
Tan04g1322 378 SUPERFAMILY PP2C-like 121 375 IPR036457 -
Tan04g1322 378 SMART PP2C_4 112 372 IPR001932 -
Tan04g1322 378 PANTHER PROTEIN PHOSPHATASE 116 372 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan04g1322 378 SMART PP2C_SIG_2 130 374 IPR001932 -
Tan04g1322 378 Gene3D - 111 376 IPR036457 -
Tan04g1322 378 CDD PP2Cc 121 374 IPR001932 -
Tan04g1322 378 ProSiteProfiles PPM-type phosphatase domain profile. 121 374 IPR001932 -
Tan04g1322 378 FunFam probable protein phosphatase 2C 25 114 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2120 Tan-Chr2:90674721 Tan04g1322 Tan-Chr4:13953942 1.30E-60 dispersed
Tan04g1322 Tan-Chr4:13953942 Tan11g1206 Tan-Chr11:9994268 8.80E-39 dispersed
Tan04g2774 Tan-Chr4:87199440 Tan04g1322 Tan-Chr4:13953942 2.30E-32 transposed
Tan08g2365 Tan-Chr8:75004998 Tan04g1322 Tan-Chr4:13953942 1.60E-99 transposed
Tan09g1217 Tan-Chr9:64519173 Tan04g1322 Tan-Chr4:13953942 7.50E-33 transposed
Tan11g0034 Tan-Chr11:639107 Tan04g1322 Tan-Chr4:13953942 9.70E-73 transposed
Tan11g0210 Tan-Chr11:1765307 Tan04g1322 Tan-Chr4:13953942 2.40E-28 transposed
Tan02g2119 Tan-Chr2:90674721 Tan04g1322 Tan-Chr4:13953942 6.80E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1322 K17506 - csv:101208170 466.848