Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1350 ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCCCCTTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCGGTGCAACAAAGAGGCGACGCTGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCGGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAACCAAGTTTCACAGCTACAAATGCAATTAGCTGTAGCTCAAGCTGAAATACTTTGCATTCAAATGCAACAAGACCATCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGAGAAACCGCCGTCTCTTCTATTTCCACCGCCGTCTCCTCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAACCTAATTTATGACGCCATTTTTGGACATGATATAGTTTCTTAA 501 48.1 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDEKPPSLLFPPPSPPPSQCLNFASSPNLIYDAIFGHDIVS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14554010 14555256 + Tan0019523.1 Tan04g1350 749754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1350 166 Coils Coil 85 105 - -
Tan04g1350 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Tan04g1350 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 115 - -
Tan04g1350 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1350 Tan-Chr4:14554010 Tan05g0519 Tan-Chr5:3585649 6.30E-50 dispersed
Tan04g1350 Tan-Chr4:14554010 Tan05g0608 Tan-Chr5:4443176 3.00E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27249 PF03195 LOB 3.70E-42 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1350 - - - 0.0