Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1372 ATGGCGGTGCTGGAACTCGTTCTGCAAGATCTATTACTAGAATATCCTGATATGATTTCCGTGATAAGGTTGAGTGGTCTTTTGCATTGCGACGACAATTCTGCTTTCAAGGAGATTGCTAGGCAGCTTTGCTCAGAGTATCAGTTATTGTTCTCAAAAATGGCATCCTTTGACGACAACTCCCAGTTTATGATAGCTATGCTACGGGAGTGTGGCTTGGCACATAAGACAATTGTTTTTATACTGGATGAGTTTGATCTTTTTGCACAAGGAAAACAACGGTTACTTTATAGTTTGTTAGATGCCATGCAATCAGTGTCATCACAAGCTGTTGTTATTGGCATCAGTTGTCGATTGGATGCTGATCAGCTACTTGAGAAAAGAGTAAGATCTCGTTTCTCCCATAGAAAGCTGTTATTTCTTCCTCCCTGCAAGGAAGATGTCGAGAGATTGTTGGAGCACATTTTATCATTGCCAATAGATTCGGACCTTCCTCATGACTACATTATTAAATTTAATGCAAAGCTTCGTAATATTTTAGCAGATGAGAGATTTAAAAAGATTATTAGCACTTATTTGGACTCTGATTCAACCGTCAAACAATTAGTGAGATATCTGTTTTGTGCCATATCAAAGATGGACTTGAAATCTGGGATGCTGACCCTTGAGAATTTTAAACATGCTCTTTCAAATATTCAGAGGCAGCCAAAGCAGGAATATATAAAAGATTGTTCCTTATTGGAGCTCTATATTCTGGTATGCATGAAAAGGTTGGAAGTGAAGGAGCAGAATTCGTACAACTTCAATTCTGTAATGAAAGAGTACAAGAATATTCATGATTCACTGCGGATGTCTGGTTATTATTCACGAAGTGTATGCTTACGGGCTTTTGAGCACCTTCTACAGCGAGAATTAATTTGTTTTGCTGATAACCGTGGGCATAATCAATCTGTTGAATTTCGACCAGTGAAGCTGTTAATATCATCTCATGAACTACATCATGGACTGAAATCTTATCATTCATGTCCTGCCATCCTTAAGAAATTAATGAATTGA 1056 37.88 MAVLELVLQDLLLEYPDMISVIRLSGLLHCDDNSAFKEIARQLCSEYQLLFSKMASFDDNSQFMIAMLRECGLAHKTIVFILDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVIGISCRLDADQLLEKRVRSRFSHRKLLFLPPCKEDVERLLEHILSLPIDSDLPHDYIIKFNAKLRNILADERFKKIISTYLDSDSTVKQLVRYLFCAISKMDLKSGMLTLENFKHALSNIQRQPKQEYIKDCSLLELYILVCMKRLEVKEQNSYNFNSVMKEYKNIHDSLRMSGYYSRSVCLRAFEHLLQRELICFADNRGHNQSVEFRPVKLLISSHELHHGLKSYHSCPAILKKLMN 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15107746 15115791 + Tan0019053.4 Tan04g1372 749776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1372 351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 233 IPR027417 -
Tan04g1372 351 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 2 350 IPR016527 GO:0000808(InterPro)|GO:0003677(InterPro)|GO:0003688(PANTHER)|GO:0005634(InterPro)|GO:0005664(PANTHER)|GO:0006260(InterPro)|GO:0006270(PANTHER)
Tan04g1372 351 PIRSF ORC4 1 351 IPR016527 GO:0000808(InterPro)|GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Tan04g1372 351 Gene3D - 2 142 IPR027417 -
Tan04g1372 351 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 151 335 IPR032705 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1372 Tan-Chr4:15107746 Tan04g1375 Tan-Chr4:15107746 1.60E-172 dispersed
Tan04g1371 Tan-Chr4:15107746 Tan04g1372 Tan-Chr4:15107746 8.40E-200 tandem
Tan04g1372 Tan-Chr4:15107746 Tan04g1373 Tan-Chr4:15107746 3.50E-199 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1372 K02606 - csv:101220845 645.195