Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1373 ATGGAAGCAGAAGATCTTCCAGAAGCAAGGGCAGCCCTCAGCCTCCTCCGCAGTAGACTCTGCAACTCTAGTTTCTATTTCAAGCCTCCATCCGATTCTTCTGATAACAATTACAGCAAATTGAAGTTTATAATATCCAGTTCGGTGGCTGAAGCGTGTAATAATTCGATCCTGCTTCTCGGCCCCCGGGGTTCAGGGAAAATGGCGGTGCTGGAACTCGTTCTGCAAGATCTATTACTAGAATATCCTGATATGATTTCCGTGATAAGGTTGAGTGGTCTTTTGCATTGCGACGACAATTCTGCTTTCAAGGAGATTGCTAGGCAGCTTTGCTCAGAGTATCAGTTATTGTTCTCAAAAATGGCATCCTTTGACGACAACTCCCAGTTTATGATAGCTATGCTACGGGAGTGTGGCTTGGCACATAAGACAATTGTTTTTATACTGGATGAGTTTGATCTTTTTGCACAAGGAAAACAACGGTTACTTTATAGTTTGTTAGATGCCATGCAATCAGTGTCATCACAAGCTGTTGTTATTGGCATCAGTTGTCGATTGGATGCTGATCAGCTACTTGAGAAAAGAGTAAGATCTCGTTTCTCCCATAGAAAGCTGTTATTTCTTCCTCCCTGCAAGGAAGATGTCGAGAGATTGTTGGAGCACATTTTATCATTGCCAATAGATTCGGACCTTCCTCATGACTACATTATTAAATTTAATGCAAAGCTTCGTAATATTTTAGCAGATGAGAGATTTAAAAAGATTATTAGCACTTATTTGGACTCTGATTCAACCGTCAAACAATTAGTGAGATATCTGTTTTGTGCCATATCAAAGATGGACTTGAAATCTGGGATGCTGACCCTTGAGAATTTTAAACATGCTCTTTCAAATATTCAGAGGCAGCCAAAGCAGGAATATATAAAAGATTGTTCCTTATTGGAGCTCTATATTCTGGTATGCATGAAAAGGTTGGAAGTGAAGGAGCAGAATTCGTACAACTTCAATTCTGTAATGAAAGAGTACAAGAATATTCATGATTCACTGCGGATGTCTGGTTATTATTCACGAAGTGTATGCTTACGGGCTTTTGAGCACCTTCTACAGCGAGAATTAATTTGTTTTGCTGATAACCGTGGGCATAATCAATCTGTTGAATTTCGACCAGTGAAGCTGTTAATATCATCTCATGAACTACATCATGGACTGAAATCTTATCATTCATGTCCTGCCATCCTTAAGAAATTAATGAATTGA 1257 39.38 MEAEDLPEARAALSLLRSRLCNSSFYFKPPSDSSDNNYSKLKFIISSSVAEACNNSILLLGPRGSGKMAVLELVLQDLLLEYPDMISVIRLSGLLHCDDNSAFKEIARQLCSEYQLLFSKMASFDDNSQFMIAMLRECGLAHKTIVFILDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVIGISCRLDADQLLEKRVRSRFSHRKLLFLPPCKEDVERLLEHILSLPIDSDLPHDYIIKFNAKLRNILADERFKKIISTYLDSDSTVKQLVRYLFCAISKMDLKSGMLTLENFKHALSNIQRQPKQEYIKDCSLLELYILVCMKRLEVKEQNSYNFNSVMKEYKNIHDSLRMSGYYSRSVCLRAFEHLLQRELICFADNRGHNQSVEFRPVKLLISSHELHHGLKSYHSCPAILKKLMN 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15107746 15115791 + Tan0019053.5 Tan04g1373 749777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1373 418 Pfam AAA domain 55 181 IPR049945 GO:0016887(InterPro)
Tan04g1373 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 300 IPR027417 -
Tan04g1373 418 Gene3D - 34 209 IPR027417 -
Tan04g1373 418 PIRSF ORC4 4 418 IPR016527 GO:0000808(InterPro)|GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Tan04g1373 418 FunFam Origin of replication complex subunit 4 35 209 - -
Tan04g1373 418 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 218 402 IPR032705 -
Tan04g1373 418 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 8 417 IPR016527 GO:0000808(InterPro)|GO:0003677(InterPro)|GO:0003688(PANTHER)|GO:0005634(InterPro)|GO:0005664(PANTHER)|GO:0006260(InterPro)|GO:0006270(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1370 Tan-Chr4:15107746 Tan04g1373 Tan-Chr4:15107746 7.70E-238 dispersed
Tan04g1371 Tan-Chr4:15107746 Tan04g1373 Tan-Chr4:15107746 7.70E-238 dispersed
Tan04g1373 Tan-Chr4:15107746 Tan04g1375 Tan-Chr4:15107746 3.60E-211 dispersed
Tan04g1372 Tan-Chr4:15107746 Tan04g1373 Tan-Chr4:15107746 3.50E-199 tandem
Tan04g1373 Tan-Chr4:15107746 Tan04g1374 Tan-Chr4:15107746 2.80E-203 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1373 K02606 - csv:101220845 758.829