Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1375 ATGGAAGCAGAAGATCTTCCAGAAGCAAGGGCAGCCCTCAGCCTCCTCCGCAGTAGACTCTGCAACTCTAGTTTCTATTTCAAGCCTCCATCCGATTCTTCTGATAACAATTACAGCAAATTGAAGTTTATAATATCCAGTTCGGTGGCTGAAGCGTGTAATAATTCGATCCTGCTTCTCGGCCCCCGGGGTTCAGGGAAAATGGCGGTGCTGGAACTCGTTCTGCAAGATCTATTACTAGAATATCCTGATATGATTTCCGTGATAAGGTTGAGTGGTCTTTTGCATTGCGACGACAATTCTGCTTTCAAGGAGATTGCTAGGCAGCTTTGCTCAGAGTATCAGTTATTGTTCTCAAAAATGGGAAAACAACGGTTACTTTATAGTTTGTTAGATGCCATGCAATCAGTGTCATCACAAGCTGTTGTTATTGGCATCAGTTGTCGATTGGATGCTGATCAGCTACTTGAGAAAAGAGTAAGATCTCGTTTCTCCCATAGAAAGCTGTTATTTCTTCCTCCCTGCAAGGAAGATGTCGAGAGATTGTTGGAGCACATTTTATCATTGCCAATAGATTCGGACCTTCCTCATGACTACATTATTAAATTTAATGCAAAGCTTCGTAATATTTTAGCAGATGAGAGATTTAAAAAGATTATTAGCACTTATTTGGACTCTGATTCAACCGTCAAACAATTAGTGAGATATCTGTTTTGTGCCATATCAAAGATGGACTTGAAATCTGGGATGCTGACCCTTGAGAATTTTAAACATGCTCTTTCAAATATTCAGAGGCAGCCAAAGCAGGAATATATAAAAGATTGTTCCTTATTGGAGCTCTATATTCTGGTATGCATGAAAAGGTTGGAAGTGAAGGAGCAGAATTCGTACAACTTCAATTCTGTAATGAAAGAGTACAAGAATATTCATGATTCACTGCGGATGTCTGGTTATTATTCACGAAGTGTATGCTTACGGGCTTTTGAGCACCTTCTACAGCGAGAATTAATTTGTTTTGCTGATAACCGTGGGCATAATCAATCTGTTGAATTTCGACCAGTGAAGCTGTTAATATCATCTCATGAACTACATCATGGACTGAAATCTTATCATTCATGTCCTGCCATCCTTAAGAAATTAATGAATTGA 1149 39.25 MEAEDLPEARAALSLLRSRLCNSSFYFKPPSDSSDNNYSKLKFIISSSVAEACNNSILLLGPRGSGKMAVLELVLQDLLLEYPDMISVIRLSGLLHCDDNSAFKEIARQLCSEYQLLFSKMGKQRLLYSLLDAMQSVSSQAVVIGISCRLDADQLLEKRVRSRFSHRKLLFLPPCKEDVERLLEHILSLPIDSDLPHDYIIKFNAKLRNILADERFKKIISTYLDSDSTVKQLVRYLFCAISKMDLKSGMLTLENFKHALSNIQRQPKQEYIKDCSLLELYILVCMKRLEVKEQNSYNFNSVMKEYKNIHDSLRMSGYYSRSVCLRAFEHLLQRELICFADNRGHNQSVEFRPVKLLISSHELHHGLKSYHSCPAILKKLMN 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15107746 15115791 + Tan0019053.7 Tan04g1375 749779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1375 382 Gene3D - 34 116 IPR027417 -
Tan04g1375 382 PIRSF ORC4 113 382 IPR016527 GO:0000808(InterPro)|GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Tan04g1375 382 PIRSF ORC4 6 123 IPR016527 GO:0000808(InterPro)|GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Tan04g1375 382 Gene3D - 117 173 IPR027417 -
Tan04g1375 382 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 182 366 IPR032705 -
Tan04g1375 382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 264 IPR027417 -
Tan04g1375 382 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 117 381 IPR016527 GO:0000808(InterPro)|GO:0003677(InterPro)|GO:0003688(PANTHER)|GO:0005634(InterPro)|GO:0005664(PANTHER)|GO:0006260(InterPro)|GO:0006270(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1372 Tan-Chr4:15107746 Tan04g1375 Tan-Chr4:15107746 1.60E-172 dispersed
Tan04g1373 Tan-Chr4:15107746 Tan04g1375 Tan-Chr4:15107746 3.60E-211 dispersed
Tan04g1374 Tan-Chr4:15107746 Tan04g1375 Tan-Chr4:15107746 8.90E-177 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1375 K02606 - csv:101220845 670.618