Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1379 ATGGATGAAATCCACACCCCATTTGATTCCAACTCTTGTTGGAAATACCCACTTAGGGATTTTGGGGTTTTGTTGACTGAGGCTGCTGATTGGTTCTGTTTTTCAGGGAAGGAGAAGGAGAAATGGAGGGTTTTGAGAAAAACCTCTCATGGGTTTGTCTCTTCTCTTCATTTTGGATTGGCTTTGTTCTTTTTCGTGGTTAGTTTGGTTTGTTTTCAGCCTGTTTTCAGCCAGGATTGGGATGGTGTGGTTGTGACTCAGGCTGATTTTCAATCCCTTCAGGCATTTAAGCAGGAACTTGATGATCCTAAAGGGTTTTTGAAGAGTTGGAATGATAGTGGATTTGGGGCTTGTTCTGGTGGTTGGGTTGGGATTAAATGTGCTAAGGGACAGGTTATTGTGATACAGCTTCCATGGAAGGGATTAGGAGGTAGAATCACTGAGAAGATTGGCCAACTTCAGGCCCTTAGGAAGCTCAGTTTACATGACAACTTGATTGGTGGATCTATCCCATCTTCATTGGGGCTTCTTCCAAATCTTAGAGGGGTTCAGTTGTTCAATAATCGATTTTCGGGTTTGATCCCAGCTTCTTTGGGGCTTTGTCCTCTGCTTCAAACTCTTCACATTAGTAACAATTTGCTCACTGGAACAATCCCTCCTAGTTTAGCTAACTCCACCAAGCTCTATTGGCTTAACTTGAGCTACAACTCGTTTTCAGGTCCGATCCCGCCAAGTCTAGCTCGATCGATGTCACTTACTTTTCTTGCTCTTCAACACAACAATCTCTCAGGCAGCATTCCTGACTCTTGGGGTGGGGACGGCACCAAGCCAAACCGGGTGTTTCAGCTCAAGTCTTTGACTCTTGATGACAATCTCCTCTCAGGTACCATACCTACTTCTTTGAGCAAGTTAAGTGAACTTCAAGTGGTTTCTCTTAGCCACAATAGGTTGAATGGTGACATTCCTGAAGAAATTAGTAGGCTTTCTTTGCTCAAAACTTTGGATGTATCTAATAATTTCCTTAATGGAAGTATGCCCCAAAGTTTTGATAGATTGAGAAATCTCTCTGTTCTCAACATGAGTAGAAACAGATTCAATGGTCAAATTCCTTCAACTTTAGGGAACATTTCAACACTTACCCAACTTGATTTATCTCAGAACAATCTAAGTGGAGAAATACCAGCTTCTCTTGCTGATTTGCAAGGTCTTCAATCCCTAAATGTCTCTTACAACAACCTTTCGGGATCGGTCCCTCCGCCTCTCGCTGAAAAATTCAATGCAAGTTCCTTTGTTGGGAATATTCAGCTCTGTGGGTTCAGTGATTCGACTCCGTGCCCGTCCCCAGCCCCTTCTCAAGAAGCTCCTGCTCCTCCACCAGAAAGTTCAACATCCCGACATCGGAAGTTGAGTACTAAAGATATAATTCTCATAGCAGCAGGAGCCCTCCTTCTAGTATTGGTGATAGTTTTCTTTGTACTTCTGTGCTGCTTGATAAGGAAAAGGGCTGCTTCAAAAGGAAAGGATGGTGGTGAGGCTACAGTGGCCGGGGCTGCGAGGGCCGAGAAGAGCATTCCTCCAACTAGCAGTGAGGTTGAAGCAGGTGGCGATGCCGGAGGAAAGCTTGTCCATTTTGACGGGCAAACAGTCTTCACAGCAGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGAACTGTTTATAAGGCCACATTGGAGGATGGAAATCAAGTTGCAGTTAAGAGATTGAGAGAGAAGATCACTAAGAGCCAGAAGGAATTTGAAGCAGAGGTCAACATACTTGGCAAGATCAGGCATCCAAATCTTCTAGCTTTAAGAGCTTATTACTTGGGACCCAAAGGAGAAAAGCTTCTCGTTTTCGATTACATGTCGAACGGAAGTCTTGCAGCGTTCCTGCACGCTCGTGGACCGGACACATCCATCGATTGGCCAACGAGAATGAAGATAGCTCAGGGTATGACCCGTGGCCTGTGTCATCTTCACACGCACGAGAACAGCATCCATGGAAACCTAACATCCAGCAACATCCTGCTTGACGAGTACATAAATGCTAAGATTGCAGATTTTGGCCTGTCAAGGTTGATGACTGCAGCTGCAAGCTCAAATGTGATAGCAACTGCAGGGGCACTCGGGTACCGAGCACCAGAGCTCTCAAAGCTGAAGAAAGCGAACACGAAAACTGACATTTACAGTCTTGGAGTAATCATATTGGAACTCCTGACTGGGAAGTCCCCCGGTGAAGCCATGAACGGAGTCGATTTGCCACAATGGGTTGCATCGATTGTCAAAGAGGAGTGGACTAATGAAGTTTTCGATTTGGAGTTGATGAGGGATGCATCTACCATTGGAGATGAGTTGCTAAACACTCTGAAACTTGCTTTGCATTGTGTCGACCCTTCACCATCGGCGAGACCGGAAGTTCAACAAGTTCTGCAACAACTGGAAGAGATTAGACCAGAGACTGCTCCCAGTTCTGGGGATGATGGAGCAGGAGCAGGAGCAGGTGGAGCCCCTTCAACAAGTGAGTGA 2562 45.32 MDEIHTPFDSNSCWKYPLRDFGVLLTEAADWFCFSGKEKEKWRVLRKTSHGFVSSLHFGLALFFFVVSLVCFQPVFSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWVGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNLIGGSIPSSLGLLPNLRGVQLFNNRFSGLIPASLGLCPLLQTLHISNNLLTGTIPPSLANSTKLYWLNLSYNSFSGPIPPSLARSMSLTFLALQHNNLSGSIPDSWGGDGTKPNRVFQLKSLTLDDNLLSGTIPTSLSKLSELQVVSLSHNRLNGDIPEEISRLSLLKTLDVSNNFLNGSMPQSFDRLRNLSVLNMSRNRFNGQIPSTLGNISTLTQLDLSQNNLSGEIPASLADLQGLQSLNVSYNNLSGSVPPPLAEKFNASSFVGNIQLCGFSDSTPCPSPAPSQEAPAPPPESSTSRHRKLSTKDIILIAAGALLLVLVIVFFVLLCCLIRKRAASKGKDGGEATVAGAARAEKSIPPTSSEVEAGGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMSNGSLAAFLHARGPDTSIDWPTRMKIAQGMTRGLCHLHTHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGAGAGAGGAPSTSE 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15185544 15188203 - Tan0018659.1 Tan04g1379 749783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1379 853 MobiDBLite consensus disorder prediction 442 466 - -
Tan04g1379 853 Pfam Leucine rich repeat N-terminal domain 88 127 IPR013210 -
Tan04g1379 853 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 198 272 - -
Tan04g1379 853 SUPERFAMILY Protein kinase-like (PK-like) 561 829 IPR011009 -
Tan04g1379 853 SMART LRR_typ_2 304 327 IPR003591 -
Tan04g1379 853 SMART LRR_typ_2 352 376 IPR003591 -
Tan04g1379 853 SMART LRR_typ_2 328 351 IPR003591 -
Tan04g1379 853 SMART LRR_typ_2 400 424 IPR003591 -
Tan04g1379 853 SMART LRR_typ_2 153 177 IPR003591 -
Tan04g1379 853 SUPERFAMILY L domain-like 126 422 - -
Tan04g1379 853 FunFam Leucine-rich repeat receptor-like kinase 88 197 - -
Tan04g1379 853 Gene3D Phosphorylase Kinase; domain 1 563 634 - -
Tan04g1379 853 Pfam Protein tyrosine and serine/threonine kinase 560 825 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g1379 853 Gene3D Ribonuclease Inhibitor 243 321 IPR032675 -
Tan04g1379 853 ProSiteProfiles Protein kinase domain profile. 557 828 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1379 853 FunFam Pollen receptor-like kinase 1 634 838 - -
Tan04g1379 853 CDD STKc_IRAK 563 828 - -
Tan04g1379 853 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 73 839 IPR052451 -
Tan04g1379 853 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 274 449 - -
Tan04g1379 853 MobiDBLite consensus disorder prediction 826 853 - -
Tan04g1379 853 FunFam Leucine-rich repeat receptor-like protein kinase 542 633 - -
Tan04g1379 853 Pfam Leucine Rich Repeat 156 175 IPR001611 GO:0005515(InterPro)
Tan04g1379 853 Pfam Leucine Rich Repeat 204 224 IPR001611 GO:0005515(InterPro)
Tan04g1379 853 Pfam Leucine Rich Repeat 251 271 IPR001611 GO:0005515(InterPro)
Tan04g1379 853 Pfam Leucine Rich Repeat 228 247 IPR001611 GO:0005515(InterPro)
Tan04g1379 853 Gene3D Ribonuclease Inhibitor 322 446 IPR032675 -
Tan04g1379 853 Gene3D Ribonuclease Inhibitor 86 242 IPR032675 -
Tan04g1379 853 Pfam Leucine rich repeat 282 339 IPR001611 GO:0005515(InterPro)
Tan04g1379 853 Pfam Leucine rich repeat 353 413 IPR001611 GO:0005515(InterPro)
Tan04g1379 853 Gene3D Transferase(Phosphotransferase) domain 1 635 839 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1379 Tan-Chr4:15185544 Tan08g2186 Tan-Chr8:73573738 3.10E-169 dispersed
Tan04g1379 Tan-Chr4:15185544 Tan08g0198 Tan-Chr8:1771376 2.50E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67458 PF07714 PK_Tyr_Ser-Thr 1.60E-40 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1379 - - - 0.0