Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1399 ATGGGAGCTTCGAGCCTCGCTTCTTTTTCATCGCTATTTGCAGTTTTTCCACTTCAAAATAACTCGCACAACAAATCCTTGCTTATTTGTTCAAAGCTTTCAAAACCCCACTTCAAATTCAACAAAATTTGGTGCGGAGTGCCTGAGAGCGGAATTAGGCGAAACCCCACAAGCGCCAAAGCCTCCAGTTCTAAGAACAGGATGGAGGAGTACAATTTGGCTATGAAGAAGATGATGAGAAACCCCTATGAGTATCATCATGAACTGGGTATGAATTATACTGTGATAGCTGACAATTTGATTGTCGGTTCTCAGCCTCAAAAACCCGAAGATATCGATTTCTTGAAGGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTCGAGTACTGGGGAATCGACTTGCAATCAATTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCAGCAAAAGATTTTGATCCAGATTCGCTTAGAAATGGATTGCCCAAAGCTGTTTCCTTGTTAGAATGGGCGATTTCGGAGGGTAAAGGTAAAGTTTATGTGCATTGCACCGCTGGACTGGGAAGGGCGCCCGCTGTTGCAATAGCTTACCTCTACTGGTTTTGCGGAATGAATTTAAATACAGCATATGAAGCCCTGACTTCAAAAAGACCTTGTGGACCAAGTAAAAGAGCGATCCGTGGAGCCACATACGATCTATCTAAAAATGATCAATGGAAGGAGCCATTCGAGAGCCTTCCAGATAATGCATTTGAGGATATTGCAGATTGGGAAAGAAGCCTGATTCAGGATCGGATCCGTTCTCTCCGTGGAACTTGA 849 42.87 MGASSLASFSSLFAVFPLQNNSHNKSLLICSKLSKPHFKFNKIWCGVPESGIRRNPTSAKASSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDIDFLKEEEGVAYILNLQQDKDVEYWGIDLQSIIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYEALTSKRPCGPSKRAIRGATYDLSKNDQWKEPFESLPDNAFEDIADWERSLIQDRIRSLRGT 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15785389 15788978 - Tan0020166.1 Tan04g1399 749803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1399 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 228 IPR000387 GO:0016311(InterPro)
Tan04g1399 282 SMART dsp_5 92 246 IPR020422 GO:0006470(InterPro)
Tan04g1399 282 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 75 282 - -
Tan04g1399 282 CDD DSP_laforin-like 91 238 IPR045204 GO:0019203(InterPro)
Tan04g1399 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 232 IPR029021 -
Tan04g1399 282 Gene3D Protein tyrosine phosphatase superfamily 75 282 IPR029021 -
Tan04g1399 282 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 57 253 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Tan04g1399 282 Coils Coil 61 81 - -
Tan04g1399 282 Pfam Dual specificity phosphatase, catalytic domain 115 229 IPR000340 GO:0016311(InterPro)
Tan04g1399 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 249 IPR020422 GO:0006470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0664 Tan-Chr4:5646137 Tan04g1399 Tan-Chr4:15785389 2.60E-38 dispersed
Tan04g1399 Tan-Chr4:15785389 Tan04g1400 Tan-Chr4:15785389 3.70E-167 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1399 - - - 0.0