Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1404 ATGTCCAAAGAAAGAGAAAGATTGGACGAGATAGCGAAGAAGGTAAAGAGAGAAACAGATGTATCATCAAATATTTGTCAACAGCAAATTATGGGGAGAAGACAGACGCTGCAGAGTCCTCCTGGGACTCTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGTCCTTTTTCCCCATACTTCTCCCCCCATGAGCCCCACAAGTTCGCCTCCGTCCACAAGGTCTTCGGCGCTAGCAACGTCTCGAAGATGCTCATGGAAGTTCCTGAGAATCAGAGAGCTGATGCTGCAAACAGCCTAGTGTATGAAGCTAATGTGAGGCTGAGAGATCCTGTCTATGGCTGCATGGGTGCCATTTCAGCTCTACAACACCAAATCCAGGCCTTACAAGCTGAGCTCAATACAGTGAGAGCTGAGATTTTGAGATACAAATACAGAGAAACTAATATGATTCACTCTTCTTCTCAACAACAAGTGCCTTTTCTTTCCTCTTCGGCTGAGGTCGTTTCGGTCGCTGTACCGCCACCGCCGCCACCTCCACCGCTACCTCCGCCCCCTCATGAGGATGCTTCTTCCTCTACCTCCTCCTTGTACAATCGGCCCGCGGCGGCGGCTGATTATAGTACTATTTCTAGCGATGAAAATGTTACCTACTTTGTTAGTACTTCTAGTACTTCTCATCAATTGAATTCTTAG 723 47.3 MSKERERLDEIAKKVKRETDVSSNICQQQIMGRRQTLQSPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNTVRAEILRYKYRETNMIHSSSQQQVPFLSSSAEVVSVAVPPPPPPPPLPPPPHEDASSSTSSLYNRPAAAADYSTISSDENVTYFVSTSSTSHQLNS 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15936011 15938189 + Tan0002237.1 Tan04g1404 749808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1404 240 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
Tan04g1404 240 Pfam Lateral organ boundaries (LOB) domain 49 146 IPR004883 -
Tan04g1404 240 MobiDBLite consensus disorder prediction 180 197 - -
Tan04g1404 240 Coils Coil 128 155 - -
Tan04g1404 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 172 - -
Tan04g1404 240 MobiDBLite consensus disorder prediction 179 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1404 Tan-Chr4:15936011 Tan05g0608 Tan-Chr5:4443176 1.30E-40 dispersed
Tan11g0319 Tan-Chr11:2505729 Tan04g1404 Tan-Chr4:15936011 1.20E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27252 PF03195 LOB 6.60E-41 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1404 - - - 0.0