Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1407 ATGGATCTCGAGCATGGAAACTGTTGGGATGCTTCCAAGAAGGGTTCTTGGAAAACGGTTCTTGTATTGGCCTATCAAAGCCTTGGCGTCGTCTATGGCGATTTGAGCATCTCTCCTCTCTACGTTTACAGAAGCACTTTTGCTGAAGACATCCAACATTCAGATACCAATGAAGAAATCTATGGTGTTCTTTCATTTGTCTTCTGGACTCTCACTATTGTCCCTCTTTTCAAATACGTCTTTGTAGTTCTCAGAGCTGATGACAATGGCGAAGGTGGAACTTTTGCTCTGTACTCGTTAATTTGCAGACATGCCAAAGTGAGCCTTCTTCCCAACAGACAAGTTGCAGATGAAGCACTTTCCACTTATTTGCTTGAACATCCACCAGAGAAGAAGAAGCAATCTAAGGTTAAATTGCTGCTGGAGAAGCACAGGGCTCTGCACACTGCCTTGTTGATTCTTGTTCTTGTTGGGACTTGTATGGTGATTGGAGATGGGCTTCTCACTCCTGCCATTTCTGTTTTCTCAGCAGTTTCTGGACTTGAGTTATCCATGACCAAGGCTCACCATCAGTATGCAGTGGTTCCAATCACTTGCTTTATCTTGGTTTGTCTATTTGCACTTCAACACTACGGCACACATCGAGTCGGCTTCGTCTTTGCTCCTGTTGTATTGACATGGCTACTCTGCATCAGTACCCTTGGCATATACAATATTATACAATGGAATCCACATGTTTATCAGGCTCTTTCTCCATATTACATGTTCAAGTTTTTGGAGAAGACAAGGAAGAGTGGTTGGATGTCATTGGGCGGTATATTGTTGTGCATAACAGGCTCAGAAGCAATGTTTGCCGATCTTGGTCACTTCTCATACACTGCAATACAGATTGCTTTCACCTTTCTGGTGTATCCAGCGCTTATATTGGCATACATGGGCCAAGCTGCTTACTTATCACAACATCACACTACCACCAACAACATTGGCTTCTATGATTCTGTTCCAGAGAGTGTGAGATGGCCAGTGCTTATAATTGCTATACTTGCTTCGGTTGTTGGAAGTCAAGCAATCATCAGCGGGACATTCTCCATTATTAACCAGAGCCAGTCCCTTGGGTGCTTCCCTAGAGTGAAGGTTGTTCATACCTCGGATAAGATTCATGGCCAGATCTACATTCCGGAGATCAATTGGATTCTTATGATTCTCTGTGTTGCAGTTACCATTGGATTTAGAGACATAAAACACCTCGGAAATGCATCAGGTCTAGCTGTAATGACTGTGATGCTTGTGACAACCTGTCTTACATCTTTGGTGATTGTTCTCTGTTGGAACAAATCTCCACTTTTGGCTCTATCCTTTTTGATCTTCTTTGGGTCTGTTGAATTGCTCTACTTCTCAGCTTCACTCACCAAGTTCAGGGAGGGTGCTTGGCTCCCCATACTCCTAGCTCTCTTCCTCATGACCATCATGTTTGTTTGGCACTATGCAACCATCAAGAAGTATGAATTCGATCTTCACAATAAGGTCTCATTAGAATGGTTGCTAGCACTGGGGCCAAGCCTCGGGATTGCTCGCGTCCCCGGTATTGGATTAGTCTTCACCGATCTCACCTCCGGTATCCCTGCCAACTTCTCCCGGTTTGTCACTAACCTTCCGGCATTTCATCGCATCCTTGTCTTTGTGTGCATAAAGTCGGTACCAGTTCCTTTTGTACCTCCTGCCGAGCGCTATCTTGTTGGACGAGTAGGCCCAGCAGCACATCGGTCATATCGGTGCATTGTTCGATATGGCTACCGTGATGTTCACCAGGACGTGGACTCATTTGAATCTGAATTAGTAAAGAAACTGGCAGACTTCATCCGCTATGATTGGTACAGAAAGCAAAGAGGCAACTCTTGCAGCGAGGACGATGCATCCCGTTCAAATGAATCAACAAGTGAGCATAGGCTGGCTGTGATAGGAACCATAGCATTTGCAGGTGCAACTGCTTATGAGGAAACTGTGCAGCCTGCAAGCGTATCAGTTGGGTTCCAAACTGTCGACAGCATCGCTGATGTGATTGAAATGGAGTCATTGGGAGAAGAAAGAAGAGTCAGGTTCGCCATAGATGATGATTTTGAAGGCGACTCACAAGCTGAAACGGAAGCCCTTCTGCACGAAGAACTAGAAGATCTTATAGCAGCCCAACAATCAGGGACAGCATTCATTCTCGGGCATTCACACGTCCGGGCGAAACAAGGATCGTCTCTGTTGAAGAGACTGGCCATTAACTATGGCTACAACTTCCTGAGAAGGAACTGCAGAGGTGCAGACGTTGCTCTTAAGGTGCCACCAGTGTCTCTTCTTGAAGTTGGCATGGTTTATGTTGTATAA 2373 45.22 MDLEHGNCWDASKKGSWKTVLVLAYQSLGVVYGDLSISPLYVYRSTFAEDIQHSDTNEEIYGVLSFVFWTLTIVPLFKYVFVVLRADDNGEGGTFALYSLICRHAKVSLLPNRQVADEALSTYLLEHPPEKKKQSKVKLLLEKHRALHTALLILVLVGTCMVIGDGLLTPAISVFSAVSGLELSMTKAHHQYAVVPITCFILVCLFALQHYGTHRVGFVFAPVVLTWLLCISTLGIYNIIQWNPHVYQALSPYYMFKFLEKTRKSGWMSLGGILLCITGSEAMFADLGHFSYTAIQIAFTFLVYPALILAYMGQAAYLSQHHTTTNNIGFYDSVPESVRWPVLIIAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVVHTSDKIHGQIYIPEINWILMILCVAVTIGFRDIKHLGNASGLAVMTVMLVTTCLTSLVIVLCWNKSPLLALSFLIFFGSVELLYFSASLTKFREGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNKVSLEWLLALGPSLGIARVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRILVFVCIKSVPVPFVPPAERYLVGRVGPAAHRSYRCIVRYGYRDVHQDVDSFESELVKKLADFIRYDWYRKQRGNSCSEDDASRSNESTSEHRLAVIGTIAFAGATAYEETVQPASVSVGFQTVDSIADVIEMESLGEERRVRFAIDDDFEGDSQAETEALLHEELEDLIAAQQSGTAFILGHSHVRAKQGSSLLKRLAINYGYNFLRRNCRGADVALKVPPVSLLEVGMVYVV 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16057729 16063395 - Tan0020308.1 Tan04g1407 749811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1407 790 Pfam K+ potassium transporter C-terminal domain 527 788 IPR053952 -
Tan04g1407 790 NCBIfam potassium uptake protein 23 789 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Tan04g1407 790 Pfam K+ potassium transporter integral membrane domain 23 515 IPR053951 -
Tan04g1407 790 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 14 789 IPR003855 GO:0005886(PANTHER)|GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1407 Tan-Chr4:16057729 Tan11g0608 Tan-Chr11:5393187 2.50E-282 dispersed
Tan04g1407 Tan-Chr4:16057729 Tan07g1332 Tan-Chr7:62505389 8.20E-289 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1407 K03549 - csv:101211022 1507.66