Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1418 ATGGCTTCTTCTTCACCATTTTCCTCTTCTCTTCTTCTTCCTTTCTTTCTCTTTCACCTCTTATTTCCCTCTATCTCCGCCGACTATGGCGGATGGCAGAGCGGCCATGCCACCTTCTATGGCGGTGGCGACGCATCTGGCACCATGGGTGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTACGGCACGAACACGGTGGCGCTGAGCACGGCGCTGTTCAACAACGGCCTGAGCTGCGGCGCTTGCTACGAAATGACCTGCACCAATGACCCCAAATGGTGCCTCCCGGGCACCATCACCGTCACCGCCACCAACTTCTGCCCGCCCAACTTCGCCCTACCAAACAACAACGGCGGCTGGTGCAACCCTCCTCTCCAGCACTTCGACATGGCTGAGCCTGCCTTCCTCCAGATCGCTCAGTACCGTGCCGGAATCGTCCCCGTCTCCTTCCGACGAGTCTCATGCGTGAAGAAAGGTGGAGTGAGGTTCACAATCAACGGCCACTCGTACTTCAACCTAGTCCTAATCACGAACGTGGGCGGGGCGGGCGACGTCCACGCCGTGTCCATAAAGGGGTCTCGAACCGGATGGCAAGCCATGTCCCGAAATTGGGGCCAAAACTGGCAGAGCAACAACTATCTCAACGGCCAAGGCCTCTCTTTTCAAGTCACTCTCAGCGATGGCCGCACCCTCACAGCCTACAATCTCGTTCCTTCCAATTGGCAGTTTGGCCAAACCTTCGAAGGCCCTCAATTCTAA 765 56.86 MASSSPFSSSLLLPFFLFHLLFPSISADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACYEMTCTNDPKWCLPGTITVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVSCVKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGRTLTAYNLVPSNWQFGQTFEGPQF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16418460 16422700 - Tan0000113.1 Tan04g1418 749822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1418 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Tan04g1418 254 FunFam Expansin 162 254 - -
Tan04g1418 254 PANTHER EXPANSIN-A15 19 254 IPR002963 GO:0009664(InterPro)
Tan04g1418 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Tan04g1418 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Tan04g1418 254 FunFam Expansin 23 158 - -
Tan04g1418 254 SMART dpbb_1 67 152 IPR007112 -
Tan04g1418 254 Gene3D - 162 254 IPR036749 -
Tan04g1418 254 Gene3D - 22 157 IPR036908 -
Tan04g1418 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664(InterPro)
Tan04g1418 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664(InterPro)
Tan04g1418 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664(InterPro)
Tan04g1418 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664(InterPro)
Tan04g1418 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Tan04g1418 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664(InterPro)
Tan04g1418 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664(InterPro)
Tan04g1418 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Tan04g1418 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664(InterPro)
Tan04g1418 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576(InterPro)
Tan04g1418 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Tan04g1418 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576(InterPro)
Tan04g1418 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Tan04g1418 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576(InterPro)
Tan04g1418 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Tan04g1418 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Tan04g1418 254 CDD DPBB_EXPA_N 31 157 - -
Tan04g1418 254 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
Tan04g1418 254 Pfam Lytic transglycolase 67 152 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0543 Tan-Chr2:4877190 Tan04g1418 Tan-Chr4:16418460 9.50E-74 dispersed
Tan03g0945 Tan-Chr3:65909605 Tan04g1418 Tan-Chr4:16418460 2.20E-105 dispersed
Tan04g1418 Tan-Chr4:16418460 Tan09g2108 Tan-Chr9:71460094 3.20E-109 dispersed
Tan11g0331 Tan-Chr11:2588227 Tan04g1418 Tan-Chr4:16418460 1.40E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1418 - - - 0.0