Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1419 ATGGAAATCCCCAATCTCTCTAATCAAATGGCTTCCTCTTCCAATCCCACCGCCCCTTTTCGCGGTTCCTTCCACCGGCGAGCCCATTCCGAGGTCCATTTCCGGATTCCGGATGATCTCGATCTTGTTCCGGACTCTTTCGATGGACCCTCCTCTGGATTTGGAGATCTGAGCTTCGAGGATGATCTATTGTGCACTTTCATGGACATCGAGAAGATCGGATCCAAAATCGACAATGGGTCGTCGTCGAAATCTGAAGCGGCAGGCGGCGGTGTTGCTGCGGCGGAGAATGTTGATGGGGAGAAAATTTCTCGCCCGAGGCACCGCCATAGCAATTCTGCTGATGGGTCTTCCATTATGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCTGATAAGCTTGCTGAGTTGTGGACTATTGATCCTAAGCGTGCTAAGAGGATTTTGGCAAATAGACAGTCTGCTGCTCGGTCAAAAGAGAGAAAAGCTCGCTACATAATGGAACTTGAGAGAAAAGTTCAAAGCCTACAGACTGAAGCAACAACTCTTTCTGCGCAGCTCACGTTGTACCAGAGAGATACCACAGGGCTTTCAACCGAAAACACAGAGCTCAAACTTCGCTTACAAGCTATGGAACAGCAAGCTCATTTACGCGACGCTCTTAATGAAGCATTGAAAAAGGAAGTCGAGCGGCTCAAGGTCGCGACTGGAGAAGTAATGACATCTACAGATTCGTACAACTTTGGAATGCCTCAAGTTTCATATCCGCAATCTTGCTTTTCGCACCAACCACAACCCGGGCGACACAACCCACAGAGGATGCAAAGGCCCCAAGTTCATCCATTCCATTCTAGTTTACCGAACCCGCATCAGGCTCTGTTTGTTGCATCCCATCAGCCACATGCCATGACGGAAATGTTTCAGCAGGATCCTATTAGTCGATTGCAGGGTCTCGATATCGGTAGCAGAGGTGTAGAATTAAAGCCAGAAGGCTCCTCCATATCCGTCAGTGAAAGTAGCAGCACATTTTAA 1032 48.64 MEIPNLSNQMASSSNPTAPFRGSFHRRAHSEVHFRIPDDLDLVPDSFDGPSSGFGDLSFEDDLLCTFMDIEKIGSKIDNGSSSKSEAAGGGVAAAENVDGEKISRPRHRHSNSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAHLRDALNEALKKEVERLKVATGEVMTSTDSYNFGMPQVSYPQSCFSHQPQPGRHNPQRMQRPQVHPFHSSLPNPHQALFVASHQPHAMTEMFQQDPISRLQGLDIGSRGVELKPEGSSISVSESSSTF 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16464132 16470058 - Tan0016347.1 Tan04g1419 749823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1419 343 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 141 204 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g1419 343 MobiDBLite consensus disorder prediction 323 343 - -
Tan04g1419 343 SMART brlzneu 139 203 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g1419 343 FunFam probable transcription factor PosF21 142 195 - -
Tan04g1419 343 Coils Coil 218 238 - -
Tan04g1419 343 MobiDBLite consensus disorder prediction 76 118 - -
Tan04g1419 343 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 11 299 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan04g1419 343 Pfam bZIP transcription factor 143 198 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g1419 343 MobiDBLite consensus disorder prediction 1 20 - -
Tan04g1419 343 Gene3D - 143 193 - -
Tan04g1419 343 MobiDBLite consensus disorder prediction 1 22 - -
Tan04g1419 343 SUPERFAMILY Leucine zipper domain 143 194 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g1419 343 Coils Coil 159 186 - -
Tan04g1419 343 MobiDBLite consensus disorder prediction 259 278 - -
Tan04g1419 343 MobiDBLite consensus disorder prediction 100 114 - -
Tan04g1419 343 CDD bZIP_plant_RF2 144 193 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1419 Tan-Chr4:16464132 Tan05g0544 Tan-Chr5:3833222 1.60E-76 dispersed
Tan04g1419 Tan-Chr4:16464132 Tan02g0389 Tan-Chr2:3330886 9.50E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27253 PF00170 bZIP_1 1.30E-08 CL0018 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1419 - - - 0.0