Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1425 ATGTCCTCCGAAGACATGAATGGCCTCAACTCCCAGCTCGTCTTCCAAGACGAAGCCATGCCCTTTAATTGCTCCACCACGCCGCAGCGCCGCGTCGTCGACCAAGGTCCCAAAACCCGCGAGCTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGTGGACCGAGACCGATTCTTCGCCCATCAGGGTGGGGATTTTCGCCGGAGTGTGTTTGGTGACAGCCGGAATTGGAATGGGAATGGGAGTGCGAGAACTGGCAGTGGGAAAGGATCGGATGAGGATGATGATGATGATGATGAAGACGATGAAGATGAAGTCGATGATGGTGATGATGATGTTGAGGGACTTGTTTCTTTGGATGATGTCAATAAGTGCAGTAAAACTGCTAACCCCAACAGCAGCAACAATGAGAGAAGCGATCAGAGTGGTGGGGGCTTGAAGAATGGGACGAACAAATTGGGAAATGGAAAGCCGAAGCACCATTCTTCTTTTGGTGGAACTTTGTTGGTCAAGGATGGGATGGTTGGCCCTTCAGGGAGTAACACAGGAGTAACTCAGAGTGAGAACCACCAGCAGGGAAGGTTGGGGAATTACCCCAATGCGGTTACAATTGCAGAACACGAAGGTGAGACTTATTATTCCCAGTATTTGCAAGGCACTGAGGGGTCTGCTTCTGGACATAAGGATTTGGCTCTGGAAAATGGATGTGGTTTTGGGAGAAGGGATGTTTCGCTCTCGGGCGAGCCTGGAGAGTCTCTGAAAGCAATCCTCACAGACCCTGTGACGGGCACTCTCATGGATGATGCTATGATATTACCGTGTGGACATTCCTTTGGTAGTGGTGGAATAGAACATGTTCTTAGAGTAAAATCTTGTTACACGTGTTCTCAGTCGGTTTCTGAAGACTCTATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGACGGGAAGAAGAATTATTATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTTGACTATGGATACTCCAAGGGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACGGATCGGGTAATTATCAAGGGGAACAAGAGGACGCCACAGCGTTTTGTGGGGCGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAATACCGCTCGCTTGCAAAGGTTCCAAACGATGCAGCATCAAAAACGATAACAAGGAAGATCGCACCGAATTGGCTTTAG 1302 48.69 MSSEDMNGLNSQLVFQDEAMPFNCSTTPQRRVVDQGPKTRELCGFMDDKLFPVDRDRFFAHQGGDFRRSVFGDSRNWNGNGSARTGSGKGSDEDDDDDDEDDEDEVDDGDDDVEGLVSLDDVNKCSKTANPNSSNNERSDQSGGGLKNGTNKLGNGKPKHHSSFGGTLLVKDGMVGPSGSNTGVTQSENHQQGRLGNYPNAVTIAEHEGETYYSQYLQGTEGSASGHKDLALENGCGFGRRDVSLSGEPGESLKAILTDPVTGTLMDDAMILPCGHSFGSGGIEHVLRVKSCYTCSQSVSEDSIAQNLSLQAAVQAFRREEELLFYRSPKRRRERFEQDKGGYGDLTMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDAASKTITRKIAPNWL 433
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 16625269 16629652 - Tan0021420.1 Tan04g1425 749829
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1425 433 MobiDBLite consensus disorder prediction 92 116 - -
Tan04g1425 433 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 7 424 - -
Tan04g1425 433 MobiDBLite consensus disorder prediction 176 195 - -
Tan04g1425 433 SUPERFAMILY RING/U-box 251 324 - -
Tan04g1425 433 MobiDBLite consensus disorder prediction 69 168 - -
Tan04g1425 433 MobiDBLite consensus disorder prediction 73 87 - -
Tan04g1425 433 MobiDBLite consensus disorder prediction 178 195 - -
Tan04g1425 433 ProSiteProfiles U-box domain profile. 252 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g1425 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 323 IPR013083 -
Tan04g1425 433 MobiDBLite consensus disorder prediction 123 149 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1425 Tan-Chr4:16625269 Tan04g1427 Tan-Chr4:16625269 3.70E-182 dispersed
Tan04g1425 Tan-Chr4:16625269 Tan04g1426 Tan-Chr4:16625269 3.70E-182 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1425 - - - 0.0