Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan04g1425 | ATGTCCTCCGAAGACATGAATGGCCTCAACTCCCAGCTCGTCTTCCAAGACGAAGCCATGCCCTTTAATTGCTCCACCACGCCGCAGCGCCGCGTCGTCGACCAAGGTCCCAAAACCCGCGAGCTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGTGGACCGAGACCGATTCTTCGCCCATCAGGGTGGGGATTTTCGCCGGAGTGTGTTTGGTGACAGCCGGAATTGGAATGGGAATGGGAGTGCGAGAACTGGCAGTGGGAAAGGATCGGATGAGGATGATGATGATGATGATGAAGACGATGAAGATGAAGTCGATGATGGTGATGATGATGTTGAGGGACTTGTTTCTTTGGATGATGTCAATAAGTGCAGTAAAACTGCTAACCCCAACAGCAGCAACAATGAGAGAAGCGATCAGAGTGGTGGGGGCTTGAAGAATGGGACGAACAAATTGGGAAATGGAAAGCCGAAGCACCATTCTTCTTTTGGTGGAACTTTGTTGGTCAAGGATGGGATGGTTGGCCCTTCAGGGAGTAACACAGGAGTAACTCAGAGTGAGAACCACCAGCAGGGAAGGTTGGGGAATTACCCCAATGCGGTTACAATTGCAGAACACGAAGGTGAGACTTATTATTCCCAGTATTTGCAAGGCACTGAGGGGTCTGCTTCTGGACATAAGGATTTGGCTCTGGAAAATGGATGTGGTTTTGGGAGAAGGGATGTTTCGCTCTCGGGCGAGCCTGGAGAGTCTCTGAAAGCAATCCTCACAGACCCTGTGACGGGCACTCTCATGGATGATGCTATGATATTACCGTGTGGACATTCCTTTGGTAGTGGTGGAATAGAACATGTTCTTAGAGTAAAATCTTGTTACACGTGTTCTCAGTCGGTTTCTGAAGACTCTATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGACGGGAAGAAGAATTATTATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTTGACTATGGATACTCCAAGGGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACGGATCGGGTAATTATCAAGGGGAACAAGAGGACGCCACAGCGTTTTGTGGGGCGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAATACCGCTCGCTTGCAAAGGTTCCAAACGATGCAGCATCAAAAACGATAACAAGGAAGATCGCACCGAATTGGCTTTAG | 1302 | 48.69 | MSSEDMNGLNSQLVFQDEAMPFNCSTTPQRRVVDQGPKTRELCGFMDDKLFPVDRDRFFAHQGGDFRRSVFGDSRNWNGNGSARTGSGKGSDEDDDDDDEDDEDEVDDGDDDVEGLVSLDDVNKCSKTANPNSSNNERSDQSGGGLKNGTNKLGNGKPKHHSSFGGTLLVKDGMVGPSGSNTGVTQSENHQQGRLGNYPNAVTIAEHEGETYYSQYLQGTEGSASGHKDLALENGCGFGRRDVSLSGEPGESLKAILTDPVTGTLMDDAMILPCGHSFGSGGIEHVLRVKSCYTCSQSVSEDSIAQNLSLQAAVQAFRREEELLFYRSPKRRRERFEQDKGGYGDLTMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDAASKTITRKIAPNWL | 433 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 16625269 | 16629652 | - | Tan0021420.1 | Tan04g1425 | 749829 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan04g1425 | 433 | MobiDBLite | consensus disorder prediction | 92 | 116 | - | - | |
| Tan04g1425 | 433 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED | 7 | 424 | - | - | |
| Tan04g1425 | 433 | MobiDBLite | consensus disorder prediction | 176 | 195 | - | - | |
| Tan04g1425 | 433 | SUPERFAMILY | RING/U-box | 251 | 324 | - | - | |
| Tan04g1425 | 433 | MobiDBLite | consensus disorder prediction | 69 | 168 | - | - | |
| Tan04g1425 | 433 | MobiDBLite | consensus disorder prediction | 73 | 87 | - | - | |
| Tan04g1425 | 433 | MobiDBLite | consensus disorder prediction | 178 | 195 | - | - | |
| Tan04g1425 | 433 | ProSiteProfiles | U-box domain profile. | 252 | 324 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Tan04g1425 | 433 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 323 | IPR013083 | - | |
| Tan04g1425 | 433 | MobiDBLite | consensus disorder prediction | 123 | 149 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan04g1425 | Tan-Chr4:16625269 | Tan04g1427 | Tan-Chr4:16625269 | 3.70E-182 | dispersed | |
| Tan04g1425 | Tan-Chr4:16625269 | Tan04g1426 | Tan-Chr4:16625269 | 3.70E-182 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan04g1425 | - | - | - | 0.0 |