Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1425 ATGTCCTCCGAAGACATGAATGGCCTCAACTCCCAGCTCGTCTTCCAAGACGAAGCCATGCCCTTTAATTGCTCCACCACGCCGCAGCGCCGCGTCGTCGACCAAGGTCCCAAAACCCGCGAGCTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGTGGACCGAGACCGATTCTTCGCCCATCAGGGTGGGGATTTTCGCCGGAGTGTGTTTGGTGACAGCCGGAATTGGAATGGGAATGGGAGTGCGAGAACTGGCAGTGGGAAAGGATCGGATGAGGATGATGATGATGATGATGAAGACGATGAAGATGAAGTCGATGATGGTGATGATGATGTTGAGGGACTTGTTTCTTTGGATGATGTCAATAAGTGCAGTAAAACTGCTAACCCCAACAGCAGCAACAATGAGAGAAGCGATCAGAGTGGTGGGGGCTTGAAGAATGGGACGAACAAATTGGGAAATGGAAAGCCGAAGCACCATTCTTCTTTTGGTGGAACTTTGTTGGTCAAGGATGGGATGGTTGGCCCTTCAGGGAGTAACACAGGAGTAACTCAGAGTGAGAACCACCAGCAGGGAAGGTTGGGGAATTACCCCAATGCGGTTACAATTGCAGAACACGAAGGTGAGACTTATTATTCCCAGTATTTGCAAGGCACTGAGGGGTCTGCTTCTGGACATAAGGATTTGGCTCTGGAAAATGGATGTGGTTTTGGGAGAAGGGATGTTTCGCTCTCGGGCGAGCCTGGAGAGTCTCTGAAAGCAATCCTCACAGACCCTGTGACGGGCACTCTCATGGATGATGCTATGATATTACCGTGTGGACATTCCTTTGGTAGTGGTGGAATAGAACATGTTCTTAGAGTAAAATCTTGTTACACGTGTTCTCAGTCGGTTTCTGAAGACTCTATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGACGGGAAGAAGAATTATTATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTTGACTATGGATACTCCAAGGGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACGGATCGGGTAATTATCAAGGGGAACAAGAGGACGCCACAGCGTTTTGTGGGGCGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAATACCGCTCGCTTGCAAAGGTTCCAAACGATGCAGCATCAAAAACGATAACAAGGAAGATCGCACCGAATTGGCTTTAG 1302 48.69 MSSEDMNGLNSQLVFQDEAMPFNCSTTPQRRVVDQGPKTRELCGFMDDKLFPVDRDRFFAHQGGDFRRSVFGDSRNWNGNGSARTGSGKGSDEDDDDDDEDDEDEVDDGDDDVEGLVSLDDVNKCSKTANPNSSNNERSDQSGGGLKNGTNKLGNGKPKHHSSFGGTLLVKDGMVGPSGSNTGVTQSENHQQGRLGNYPNAVTIAEHEGETYYSQYLQGTEGSASGHKDLALENGCGFGRRDVSLSGEPGESLKAILTDPVTGTLMDDAMILPCGHSFGSGGIEHVLRVKSCYTCSQSVSEDSIAQNLSLQAAVQAFRREEELLFYRSPKRRRERFEQDKGGYGDLTMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDAASKTITRKIAPNWL 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16625269 16629652 - Tan0021420.1 Tan04g1425 749829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1425 433 MobiDBLite consensus disorder prediction 92 116 - -
Tan04g1425 433 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 7 424 - -
Tan04g1425 433 MobiDBLite consensus disorder prediction 176 195 - -
Tan04g1425 433 SUPERFAMILY RING/U-box 251 324 - -
Tan04g1425 433 MobiDBLite consensus disorder prediction 69 168 - -
Tan04g1425 433 MobiDBLite consensus disorder prediction 73 87 - -
Tan04g1425 433 MobiDBLite consensus disorder prediction 178 195 - -
Tan04g1425 433 ProSiteProfiles U-box domain profile. 252 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g1425 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 323 IPR013083 -
Tan04g1425 433 MobiDBLite consensus disorder prediction 123 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1425 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1425 Tan-Chr4:16625269 Tan04g1427 Tan-Chr4:16625269 3.70E-182 dispersed
Tan04g1425 Tan-Chr4:16625269 Tan04g1426 Tan-Chr4:16625269 3.70E-182 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g0049 . 3 723 Plant U-box Gene Family AT5G57035 54.4 4.7e-228 788.5
Tan08g0050 . 3 665 Plant U-box Gene Family AT5G57035 53.1 4.3e-205 712.2
Tan04g1425 . 201 433 Plant U-box Gene Family AT5G05230 58.8 8.6e-68 255.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40