Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1429 ATGAAACAGCTGATTGAGCTCTTCTTCTTGTTCGTTTTAGCTCCACTCTGTGCTAGATGTGTAAACCTATCTTTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCTGCCGTTCAAGATCCGAAGAAGAACCTCGCGACCTGGGACGAAGATAACGATAGTCCCTGCAACTGGAATGGTATTAAATGCAGTCCCAGATCCAACCGGGTCGTCGAGCTCAACCTCGATGGATTCTCTCTCTCGGGAAGGCTTGGCCGGGGGCTTTTCCAGTTGGAGTTTCTGCAGAGATTGTCGCTCTCGAAGAACAATCTCAGTGGCAATTTAAACCCCAATTTCGCTCGAGTGGATAATCTTCAGGCGATTGATTTGAGTGGGAATAATTTCTCCGGGACTGTTCCGGATGATTTTTTTCGTCAATGTGGATCTTTGAGAGTTGTTTCTTTGGGAAACAACAAATTTTCTGGGAATATTCCTGTGAGTTTGAGCTTGTGTGGGAGTCTTATTGCAGTTAACTTGTCCTCGAATCAGTTTTCGGGTCCTTTGCCTTCTGGGATTTGGTCTCTAAGTGGGCTTCGATCATTGGACTTGTCTGATAATGCTTTGGTGGGTGAAATTCCGAAGGTAATTGAGAATTTGTATAATCTTCGGACTCTTAACTTGAGAAAGAATCGATTTTCTGGACAGATTCCTGATGGTATTGGGAGCTGTTTGCTTCTGAGGTCCATTGATCTTAGTGAGAATTCATTCTCTGGGAATCTTCCTCAGACCATGCACAAACTTGTTTTGTGTAGTAATCTGATTTTAAGCAGGAATTTGTTCGAAGGAGATGTTCCAGGGTGGATAGGAGAAATGAAAAACCTTGAGACTCTGGACTTTTCTGGGAACAATTTTACTAGCCACATTCCAACTACAATGGAGAATCTTCAATATCTAAAAGTATTGAATCTCTCTTCAAATGGCTTTACTGATAGCTTTCCAGAGTCTGTGATGAAATGCCAAAGCCTTTTAGCCATAGATTTCAGTCATAATTCGATCAAGGGTAATCTTCCGGGGTTTGGAAGTTTAGGCAAGCTGCAGTTTCTGAACTTGTCTGGGAATTCTTTTGTTGGTCCTATTCCAGAAACTATAGGAGATCTGAAAGCTTTGAGCATTCTTGATTTGAGCAGAAATCGGCTGAATGAAAGCATTCCCGAGGCAATTGGAGGAGCTGTGTCCCTAATGGAGCTGAAGCTGGATGAAAATTTTCTAGGGGGTGAAATTCCCTCTTCAATTGTTCATTGTTCTTCGCTCACAACTTTGTACATATCACACAATAACTTAACTGGCCTGATACCGCCGGCATTAGCTAAACTCTCTTATCTCCAAAATGTTGACTTATCCTTCAACAACCTCAATGGAACCCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCTGATGTTCAATATTTCTCATAACGACCTCAAGGGTGAGCTGCCTGCTGGTGTATTCTTTAACACCATCTCCCCTTCATCCGTTGCTGGAAATCCGTCCCTCTGTGGCTCTATTGTTAATAAGTCTTGCCCTTCTGTCCTTCCAAAGCCTATTGTTCTTAATCCCAACTCCACTTCAGATTCCATTTCCAACTCACTGCCTCCAAGTATTACTCACAGAAGAAATAGAAATATCCTCAGCATTTCTGCACTGGTTGCCATTGGTGCAGCTGCTTTCATCATCATTGGCGTGATATTGATCACCATCCTCAACATTCGTGTTCAATCACCTACGTCTTCTTCTTCTGCAGCTGCACTTGCATTATCTGTTGGGGATGATTTTAGTCATTCATCCAGTCCGGACGCAAATTCTGGAAAGCTTGTGGTGTTATCAGGAGAACTTGACTTTAGCACAGGAGCACATGCCCTGCTAAACAAGGATTGTGAGCTTGGGCGTGGTGGATTCGGAGCAGTTTACCATACTGTTCTGCGGGACGGACACTCTGTTGCAATCAAGAAGCTTACAGTTTCTAGCCTTGTCAAGTCCCAAGAGGATTTTGAGAGGGAAGTTAGGAAGTTTGGGAGTGTCAGGCACCAAAATCTCGTGGCACTCGAAGGTTATTATTGGACTCCCTCGTTACAGCTCCTTATATACGAATTTGTCTCTGGAGGTAGCTTGTATGGGCTGCTACACGAAGCATCGGATGACAATGTCCTGTCATGGAATGAGAGATTTGACATAATTCTCGGCACAGCAAAAGGATTGGCTCACTTGCATCAATCAAACACAATCCACTATAACATAAAATCCAGCAATATTCTTATGGATTGCAATGGTCAACCTAAGGTGGGAGATTATGGTCTAGCTAGATTGCTGCCAATGTTAGACCGTTATGCTTTAAGTAGCAAAATCCAGAGTGCACTCGGTTACATGGCACCAGAGTTTGCTTGCAGGACAGTGAAGATAACCGAAAAATGCGACGTTTATGGCTTTGGGATCTTGATTCTTGAGGTAGTTACAGGGAAGAGACCTGTCGAGTACATGGAAGATGATGTTGCAGTCCTCTGCGACATGGTCAGAGGAGTAGTGGAAGAGGGAAAGGCCGAAGAATGCATCGATAGGAAGCTGAGGGGGAATTTCCCAGCCGAAGAAGCCATTCCCGTATTAAAATTAGGCTTGATCTGCACCTCCCATGTGCCATCAAACCGGCCCGACATGAGAGAAATGGTCAAGATACTAGAGATGATCAAATGCCCATCCGAATTACAAGAGGAATTGGGATAA 2760 43.7 MKQLIELFFLFVLAPLCARCVNLSLNDDVLGLIVFKAAVQDPKKNLATWDEDNDSPCNWNGIKCSPRSNRVVELNLDGFSLSGRLGRGLFQLEFLQRLSLSKNNLSGNLNPNFARVDNLQAIDLSGNNFSGTVPDDFFRQCGSLRVVSLGNNKFSGNIPVSLSLCGSLIAVNLSSNQFSGPLPSGIWSLSGLRSLDLSDNALVGEIPKVIENLYNLRTLNLRKNRFSGQIPDGIGSCLLLRSIDLSENSFSGNLPQTMHKLVLCSNLILSRNLFEGDVPGWIGEMKNLETLDFSGNNFTSHIPTTMENLQYLKVLNLSSNGFTDSFPESVMKCQSLLAIDFSHNSIKGNLPGFGSLGKLQFLNLSGNSFVGPIPETIGDLKALSILDLSRNRLNESIPEAIGGAVSLMELKLDENFLGGEIPSSIVHCSSLTTLYISHNNLTGLIPPALAKLSYLQNVDLSFNNLNGTLPKQLSNLPNLLMFNISHNDLKGELPAGVFFNTISPSSVAGNPSLCGSIVNKSCPSVLPKPIVLNPNSTSDSISNSLPPSITHRRNRNILSISALVAIGAAAFIIIGVILITILNIRVQSPTSSSSAAALALSVGDDFSHSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTVLRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGSVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYGLLHEASDDNVLSWNERFDIILGTAKGLAHLHQSNTIHYNIKSSNILMDCNGQPKVGDYGLARLLPMLDRYALSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVAVLCDMVRGVVEEGKAEECIDRKLRGNFPAEEAIPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPSELQEELG 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16740121 16744155 - Tan0017383.1 Tan04g1429 749833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1429 919 Pfam Leucine rich repeat 311 368 IPR001611 GO:0005515(InterPro)
Tan04g1429 919 Pfam Leucine rich repeat 430 489 IPR001611 GO:0005515(InterPro)
Tan04g1429 919 Pfam Leucine rich repeat 191 249 IPR001611 GO:0005515(InterPro)
Tan04g1429 919 SUPERFAMILY L domain-like 189 549 - -
Tan04g1429 919 CDD STKc_IRAK 642 906 - -
Tan04g1429 919 ProSitePatterns Protein kinases ATP-binding region signature. 642 665 IPR017441 GO:0005524(InterPro)
Tan04g1429 919 SMART LRR_typ_2 213 237 IPR003591 -
Tan04g1429 919 SMART LRR_typ_2 116 140 IPR003591 -
Tan04g1429 919 SMART LRR_typ_2 189 212 IPR003591 -
Tan04g1429 919 SMART LRR_typ_2 476 500 IPR003591 -
Tan04g1429 919 SMART LRR_typ_2 428 451 IPR003591 -
Tan04g1429 919 SMART LRR_typ_2 285 309 IPR003591 -
Tan04g1429 919 SMART LRR_typ_2 380 404 IPR003591 -
Tan04g1429 919 FunFam Inactive leucine-rich repeat receptor-like protein kinase 186 280 - -
Tan04g1429 919 Gene3D Phosphorylase Kinase; domain 1 625 712 - -
Tan04g1429 919 Gene3D Transferase(Phosphotransferase) domain 1 713 917 - -
Tan04g1429 919 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 25 185 - -
Tan04g1429 919 SMART LRR_sd22_2 285 311 - -
Tan04g1429 919 SMART LRR_sd22_2 189 215 - -
Tan04g1429 919 SMART LRR_sd22_2 92 121 - -
Tan04g1429 919 SMART LRR_sd22_2 380 399 - -
Tan04g1429 919 SMART LRR_sd22_2 452 478 - -
Tan04g1429 919 ProSiteProfiles Protein kinase domain profile. 636 908 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1429 919 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 92 910 IPR050647 -
Tan04g1429 919 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 351 525 - -
Tan04g1429 919 SUPERFAMILY Protein kinase-like (PK-like) 640 906 IPR011009 -
Tan04g1429 919 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 630 712 - -
Tan04g1429 919 SUPERFAMILY L domain-like 26 274 - -
Tan04g1429 919 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 713 914 - -
Tan04g1429 919 Pfam Protein tyrosine and serine/threonine kinase 638 904 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g1429 919 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Tan04g1429 919 Gene3D Ribonuclease Inhibitor 312 526 IPR032675 -
Tan04g1429 919 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Tan04g1429 919 Gene3D Ribonuclease Inhibitor 185 306 IPR032675 -
Tan04g1429 919 Pfam Leucine Rich Repeat 383 403 IPR001611 GO:0005515(InterPro)
Tan04g1429 919 Pfam Leucine Rich Repeat 95 114 IPR001611 GO:0005515(InterPro)
Tan04g1429 919 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515(InterPro)
Tan04g1429 919 Pfam Leucine Rich Repeat 143 163 IPR001611 GO:0005515(InterPro)
Tan04g1429 919 Pfam Leucine Rich Repeat 287 309 IPR001611 GO:0005515(InterPro)
Tan04g1429 919 Pfam Leucine Rich Repeat 168 189 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1429 Tan-Chr4:16740121 Tan08g2242 Tan-Chr8:73945426 2.70E-158 dispersed
Tan11g0336 Tan-Chr11:2634873 Tan04g1429 Tan-Chr4:16740121 2.50E-191 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67459 PF07714 PK_Tyr_Ser-Thr 3.00E-40 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1429 - - - 0.0