Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1444 ATGGAAGCTCCTGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAATGGGGTTCTGAAAATGGCTATCAACCCCATGTTCTTGCTGTTGATGATAATCTTGTTGATCGTAAACTTGTGGAAAAGTTGCTCAAAAACTCCTCTTGTAAAGTAACAACTGCAGAAAATGGTCGCAGTGCTTTAGAGTTTCTGGGTTTGTTAGATGATCATCAACACAACAACTTAGAATGCACCACTAGGTCAAAAGTGAACTTAGTTATCACAGATTATTGCATGCCAGGAATGTCTGGATACGAACTTCTCAAGAAAATCAAGAGATCTTCGAGGATGAAGGAAGTTCCTGTAGTGATTGTATCATCGGAGAATGTGCCCACTCGCATCAACAAGTGTTTGGAGGAAGGAGCAGAAATGTTCATGCTGAAACCTTTGAAGCAATCTGATGTTGTGAAACTCAAGTGCCAGTTGATGAACTGA 549 39.34 MEAPGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSKWGSENGYQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGRSALEFLGLLDDHQHNNLECTTRSKVNLVITDYCMPGMSGYELLKKIKRSSRMKEVPVVIVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKCQLMN 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16954915 16957854 + Tan0018015.1 Tan04g1444 749848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1444 182 SMART REC_2 50 177 IPR001789 GO:0000160(InterPro)
Tan04g1444 182 Gene3D - 46 182 - -
Tan04g1444 182 Pfam Response regulator receiver domain 52 175 IPR001789 GO:0000160(InterPro)
Tan04g1444 182 CDD REC_typeA_ARR 52 176 - -
Tan04g1444 182 MobiDBLite consensus disorder prediction 1 44 - -
Tan04g1444 182 ProSiteProfiles Response regulatory domain profile. 51 181 IPR001789 GO:0000160(InterPro)
Tan04g1444 182 PANTHER TWO-COMPONENT RESPONSE REGULATOR 50 177 IPR045279 GO:0009736(InterPro)
Tan04g1444 182 SUPERFAMILY CheY-like 50 176 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1444 Tan-Chr4:16954915 Tan08g1252 Tan-Chr8:38118784 6.90E-42 dispersed
Tan04g1444 Tan-Chr4:16954915 Tan09g2194 Tan-Chr9:71968697 2.10E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27254 PF00072 Response_reg 7.10E-22 CL0304 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1444 K14492 - csv:101208898 253.447