Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1456 ATGGAGACCTCGGCTTCCAATTCTGATCCTTACCCCAATTCTTCTTCACCCACAAGTGCTCGTAGCTCCTCCAGATTTGGGGTCTCGTTCCCTTCGCTGAATTTCTTCCGTTCGCCTCTGTCCGTCATTTTGGATTACTCCGGAATTCTTCCCACTAGGGCTGTTCGTCATGAATCTGAGCCTATAATCAACGGCTCTGCCACTCCTGATTTGCGGGTTTATTCCCAAAATCAGAATCACTTGATGACCACTTCTTCTTCTTCTACTACTGCCACCTCCTCCTCCGGTAATACCAGCCCCTCTGGGGAGGTTTCGATTAGGATCATCGGGTCTGGTGAACATGATCCTTCTCCTAGTGGGTTGTTACCAACTCCAGCTCTGATTGGACAAGCTGGTTATGAGCAAAATGGCGGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCTTTGGTGTCCACCGCTTCTTCGTCCATTCAATCTGGAAGCAGTCGTGTTGATGGAGAATCGGGAAATGGCGTGGAAGATAGTGTTAATAGAGATTCGTCTTATCAGAGATACGATATCCAGCAGGTTGCCAGATGGATTGAACAGATTCTTCCATTCTCTTTGCTACTGCTGATAGTTTTTATCCGTCAGCATTTAGAAGGTTTTTTCATCACAATTTGGATATCAGCTGTTATGTATAAGTCAAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGAGAGAGGAAAATTTCTGTCCTTGCTGGCACTTCTATTGCATTTTTGGTTCACGTAATTGGGATTTACTGGTGGTGTTATAATGACGATCTTCTGTACCCATTAGTCATGCTTCCACCAAAGACAGTACCACCATTTTGGCATGCCTTGTTCATCATTTTGGTTAACGATACGATGGTGAGGCAGATTGCAATGGTGCTCAAATGTTTTCTTCTTATTTACTACAAGAATGGCCGTGGCCATAATTTTCGCCGGCAGGGTCAAATTTTAACTCTCATGGAATACACTCTTCTGTTGTACCGTGCATTATTACCAACACCCGTATGGTACCGGTTCTTCTTGAACAAAGATCAAGGGAGCCTTTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGATTCAATCATTCGTTGCTGCATTTAAGGCTCTATCACGAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGTAAATGCTGCGGGAGACCTCTGTGCTATTTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCAGAATGGTTTGAAAGAGAAAGAACTTGCCCCCTTTGCCGGGCACTGGTAAAGCCTGCAGAACTTCGAACATTTGGTGACGGGTCAACCAGCTTACTCTTCCAGTTGTTTTAG 1452 44.28 METSASNSDPYPNSSSPTSARSSSRFGVSFPSLNFFRSPLSVILDYSGILPTRAVRHESEPIINGSATPDLRVYSQNQNHLMTTSSSSTTATSSSGNTSPSGEVSIRIIGSGEHDPSPSGLLPTPALIGQAGYEQNGGLPVSGDQPESPDEERVPLVSTASSSIQSGSSRVDGESGNGVEDSVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWISAVMYKSNDIVKKQTALKGERKISVLAGTSIAFLVHVIGIYWWCYNDDLLYPLVMLPPKTVPPFWHALFIILVNDTMVRQIAMVLKCFLLIYYKNGRGHNFRRQGQILTLMEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSRKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17499213 17511464 + Tan0021257.1 Tan04g1456 749860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1456 483 ProSitePatterns Zinc finger RING-type signature. 437 446 IPR017907 -
Tan04g1456 483 ProSiteProfiles Zinc finger RING-type profile. 422 460 IPR001841 -
Tan04g1456 483 SUPERFAMILY RING/U-box 415 465 - -
Tan04g1456 483 MobiDBLite consensus disorder prediction 155 184 - -
Tan04g1456 483 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 13 483 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
Tan04g1456 483 SMART ring_2 422 459 IPR001841 -
Tan04g1456 483 MobiDBLite consensus disorder prediction 81 105 - -
Tan04g1456 483 Pfam Ring finger domain 421 460 IPR001841 -
Tan04g1456 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 469 IPR013083 -
Tan04g1456 483 MobiDBLite consensus disorder prediction 81 184 - -
Tan04g1456 483 CDD RING-HC_RNFT1-like 420 460 - -
Tan04g1456 483 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0676 Tan-Chr3:62269030 Tan04g1456 Tan-Chr4:17499213 1.70E-156 dispersed
Tan04g1456 Tan-Chr4:17499213 Tan07g0312 Tan-Chr7:6518690 3.00E-07 dispersed
Tan04g1456 Tan-Chr4:17499213 Tan07g1616 Tan-Chr7:67566744 5.60E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1456 - - - 0.0