Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1479 ATGGTTTCAAGGTCGTATTCCAATTTGCTCGAACTCGCCACCGGAGAATCGCCGTCTTTCGGCCGTATAAACCGCCAAATCCCTCGGATTATGACCGTCGCCGGCTTAATCTCCGACATCGACGACGACCCATCGGAGAGCGTCTCCTCGGAGCCGTCCTCCTCCTCCGCCCCCCGCGACCGGATTATCATCGTCGCCAATGAGCTCCCCATCAGAGCCCACCGGAAAACAGGCAGCGGCGGAGCCACCGCCGGCTGGACTTTCAGCTGGGATGAAAATTCCCTTCTCCTCCAGCTGAAAGATGGGCTGGGAGATGATGATTTTGAGGTGTTTTATGTGGGTTGTCTCAAGGAAGATATTCATCCAAACGAACAAGATGAAGTCTCTCAAATACTTTTAGAGACTTTCAAATGTGTCCCAACATTTCTCACTCAAGAACTCTACACTAGGTACTACCATGGCTTCTGCAAGCAGCAGCTATGGCCTCTGTTTCATTACATGTTACCTCTTTCGCCTGACCTCGGTGGTCGATTCAATCGGTCGCTGTGGCAGGCTTATGTTTCTGTGAACAAGATCTTTGCTGATAGGATCATGGAAGTGATCAATCCTGAGGATGACTTTGTTTGGATTCATGATTATCATCTCATGGTGTTGCCTACTTTTTTGAGGAAGAGATTCAATAGGGTCAAGCTTGGATTCTTTTTGCATAGTCCGTTCCCATCGTCCGAGATATATCGGACGCTCCCAATCCGGGAGGAGCTCTTGCGAGCCCTCCTGAATTCGGATTTGATAGGGTTTCATACTTTTGATTATGCTAGGCATTTTCTATCTTGTTGTAGTCGAATGCTTGGTCTAACTTATGAGTCGAAACGGGGGTATATTGGGCTAGAGTATTATGGTCGAACCATTAGTATTAAGATCCTTCCTGTTGGGATTCATATGGGTCAGCTTCAATCTGTTTTGAGCCTTCAGAAGACTGAGGAGAAGGTCAGTGAACTTATCAAGCAGTTTCGCGATCGGGATAGGATAATGTTGCTTGGTGTCGACGATATGGATATATTTAAGGGGATAAGTTTGAAGCTTTTGGCTATGGAACAGTTGTTGATCACACACCCCGAGTGGCAGGGGAAAGTAGTATTGGTGCAGATTGCCAATCCTGCAAGAGGACGAGGGAAAGATGTGAAGGAAGTTCAGGATGAGACGAAGGCAACTGTTAAGCGGATTAACGATGTTTTTGGGAGACCTGGGTATGAGCCAGTTGTGTTGATTGAGGAACCACTCAAATTCTATGAGAGAGTTGCATATTATACAGTCGCCGAATGTTGTTTGGTCACTGCGGTTCGGGACGGTATGAATCTCATTCCATATGAGTACATTGTCAGTCGTCAAGGGAATGATAAGTTGGATAAACTCTTGGGGTGGGAATCATCAGCCCCAAAGAAGAGTATGTTGGTTATATCCGAGTTTATTGGGTGCTCTCCATCCTTGAGCGGAGCAATTCGAGTTAATCCCTGGAATATTGATGTTGTAGCTGATGCAATGGAATGTGCATTGGAGATGGAAGATGCGGAGAAGCAACTCCGCCATGAGAAGCATTTTAGATATGTGAGCACGCATGATGTCGGGTATTGGGCTCGGAGTTTCCTACAAGATTTGGAGAGGACTTGTAGGGATCATGTGAGGCAGAGATGTTGGGGTATTGGGTTTGGTTTAAGTTTTCGAGTCGTGGCTCTTGATCCGAACTTCAGGAAGCTCGCAATGGAACACATAATTTCGACTTATAAGAGAACGAAATCTCGGGCAATTCTTTTGGACTACGATGGTACATTAATGCCTCAAGCTTTGATTGACAAGAGTCCTACTTCGAAATGCCTCGAAACTCTTAATACCTTATGTCGGGATAAGAACAATATGGTGTTCATTGTGAGTGCAAAAAGTCGTAAGACGCTTGATGAATGGTTTGCGCCTTGCGAAAATCTCGGCATTGCTGCTGAGCACGGATACTTTATTAGGTTAAAGCAGGATGAAGAATGGGAAAGCAGTTTGCCAGTTGCAGATTGCTGTTGGAAGCAGATTGTGCAGCCAGTGATGAAACTCTACACTGAAACAACTGATGGATCGACAATCGAAGATCGAGAAACTGCGCTCGGATGGTGTTATGAAGATGCAGATCCGGATTTCGGTTCGTGTCAGGCTAAGGAGCTCTTCGATCATCTCGAAAGTGTCCTAGCCAACGAACCAGTTACTGTCAAAAGTGGTCAAAACATTGTGGAAGTTAAACCACAGGGCGTCAGCAAGGGTCTTGTAGCAAAACGACTTCTCTCCGTGATGCAAGAGAAGGGGACCCCTGTAGATTTTGTTCTCTGCATTGGCGACGACAGATCAGATGAAGACATGTTCAAGGTGATCGCAAGTTCCATGGCAGGTCCATCGATCGCACCTCGAGCCGAAATTTTTGCTTGTACAGTAGGGAAGAAACCAAGCAAAGCCAAGTATTACCTCGACGATCCATCAGAAATTGCGAGGTTGATGCATGGTTTGGCTTCGGTGTCGAGGCAGAACGTCCTGCTTTATCCGTCCCAAAGCTGA 2589 46.47 MVSRSYSNLLELATGESPSFGRINRQIPRIMTVAGLISDIDDDPSESVSSEPSSSSAPRDRIIIVANELPIRAHRKTGSGGATAGWTFSWDENSLLLQLKDGLGDDDFEVFYVGCLKEDIHPNEQDEVSQILLETFKCVPTFLTQELYTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTISIKILPVGIHMGQLQSVLSLQKTEEKVSELIKQFRDRDRIMLLGVDDMDIFKGISLKLLAMEQLLITHPEWQGKVVLVQIANPARGRGKDVKEVQDETKATVKRINDVFGRPGYEPVVLIEEPLKFYERVAYYTVAECCLVTAVRDGMNLIPYEYIVSRQGNDKLDKLLGWESSAPKKSMLVISEFIGCSPSLSGAIRVNPWNIDVVADAMECALEMEDAEKQLRHEKHFRYVSTHDVGYWARSFLQDLERTCRDHVRQRCWGIGFGLSFRVVALDPNFRKLAMEHIISTYKRTKSRAILLDYDGTLMPQALIDKSPTSKCLETLNTLCRDKNNMVFIVSAKSRKTLDEWFAPCENLGIAAEHGYFIRLKQDEEWESSLPVADCCWKQIVQPVMKLYTETTDGSTIEDRETALGWCYEDADPDFGSCQAKELFDHLESVLANEPVTVKSGQNIVEVKPQGVSKGLVAKRLLSVMQEKGTPVDFVLCIGDDRSDEDMFKVIASSMAGPSIAPRAEIFACTVGKKPSKAKYYLDDPSEIARLMHGLASVSRQNVLLYPSQS 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18882171 18885972 - Tan0016358.1 Tan04g1479 749883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1479 862 Gene3D Glycogen Phosphorylase B; 54 319 - -
Tan04g1479 862 FunFam Alpha,alpha-trehalose-phosphate synthase 320 537 - -
Tan04g1479 862 SUPERFAMILY HAD-like 600 845 IPR036412 -
Tan04g1479 862 Pfam Trehalose-phosphatase 603 838 IPR003337 GO:0005992(InterPro)
Tan04g1479 862 Gene3D - 599 715 IPR023214 -
Tan04g1479 862 Gene3D - 729 856 IPR023214 -
Tan04g1479 862 CDD HAD_TPP 601 839 - -
Tan04g1479 862 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 729 857 - -
Tan04g1479 862 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 318 - -
Tan04g1479 862 FunFam Trehalose-6-phosphate synthase 2 683 762 - -
Tan04g1479 862 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 556 - -
Tan04g1479 862 CDD GT20_TPS 61 553 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Tan04g1479 862 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 599 716 - -
Tan04g1479 862 Pfam Glycosyltransferase family 20 61 553 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Tan04g1479 862 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 850 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
Tan04g1479 862 NCBIfam HAD-IIB family hydrolase 602 803 IPR006379 -
Tan04g1479 862 Gene3D Glycogen Phosphorylase B; 320 537 - -
Tan04g1479 862 NCBIfam trehalose-phosphatase 598 847 IPR003337 GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2209 Tan-Chr1:26198772 Tan04g1479 Tan-Chr4:18882171 0.00E+00 dispersed
Tan01g2210 Tan-Chr1:26198772 Tan04g1479 Tan-Chr4:18882171 0.00E+00 dispersed
Tan03g2598 Tan-Chr3:79127018 Tan04g1479 Tan-Chr4:18882171 0.00E+00 dispersed
Tan04g1479 Tan-Chr4:18882171 Tan09g2228 Tan-Chr9:72247966 3.1e-310 dispersed
Tan04g1479 Tan-Chr4:18882171 Tan04g1480 Tan-Chr4:18882171 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1479 K16055 - vvi:100252552 1487.24