Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1480 ATGGTTTCAAGGTCGTATTCCAATTTGCTCGAACTCGCCACCGGAGAATCGCCGTCTTTCGGCCGTATAAACCGCCAAATCCCTCGGATTATGACCGTCGCCGGCTTAATCTCCGACATCGACGACGACCCATCGGAGAGCGTCTCCTCGGAGCCGTCCTCCTCCTCCGCCCCCCGCGACCGGATTATCATCGTCGCCAATGAGCTCCCCATCAGAGCCCACCGGAAAACAGGCAGCGGCGGAGCCACCGCCGGCTGGACTTTCAGCTGGGATGAAAATTCCCTTCTCCTCCAGCTGAAAGATGGGCTGGGAGATGATGATTTTGAGGTGTTTTATGTGGGTTGTCTCAAGGAAGATATTCATCCAAACGAACAAGATGAAGTCTCTCAAATACTTTTAGAGACTTTCAAATGTGTCCCAACATTTCTCACTCAAGAACTCTACACTAGGTACTACCATGGCTTCTGCAAGCAGCAGCTATGGCCTCTGTTTCATTACATGTTACCTCTTTCGCCTGACCTCGGTGGTCGATTCAATCGGTCGCTGTGGCAGGCTTATGTTTCTGTGAACAAGATCTTTGCTGATAGGATCATGGAAGTGATCAATCCTGAGGATGACTTTGTTTGGATTCATGATTATCATCTCATGGTGTTGCCTACTTTTTTGAGGAAGAGATTCAATAGGGTCAAGCTTGGATTCTTTTTGCATAGTCCGTTCCCATCGTCCGAGATATATCGGACGCTCCCAATCCGGGAGGAGCTCTTGCGAGCCCTCCTGAATTCGGATTTGATAGGGTTTCATACTTTTGATTATGCTAGGCATTTTCTATCTTGTTGTAGTCGAATGCTTGGTCTAACTTATGAGTCGAAACGGGGGTATATTGGGCTAGAGTATTATGGTCGAACCATTAGTATTAAGATCCTTCCTGTTGGGATTCATATGGGTCAGCTTCAATCTGTTTTGAGCCTTCAGAAGACTGAGGAGAAGGTCAGTGAACTTATCAAGCAGTTTCGCGATCGGGATAGGATAATGTTGCTTGGTGTCGACGATATGGATATATTTAAGGGGATAAGTTTGAAGCTTTTGGCTATGGAACAGTTGTTGATCACACACCCCGAGTGGCAGGGGAAAGTAGTATTGGTGCAGATTGCCAATCCTGCAAGAGGACGAGGGAAAGATGTGAAGGAAGTTCAGGATGAGACGAAGGCAACTGTTAAGCGGATTAACGATGTTTTTGGGAGACCTGGGTATGAGCCAGTTGTGTTGATTGAGGAACCACTCAAATTCTATGAGAGAGTTGCATATTATACAGTCGCCGAATGTTGTTTGGTCACTGCGGTTCGGGACGGTATGAATCTCATTCCATATGAGTACATTGTCAGTCGTCAAGGGAATGATAAGTTGGATAAACTCTTGGGGTGGGAATCATCAGCCCCAAAGAAGAGTATGTTGGTTATATCCGAGTTTATTGGGTGCTCTCCATCCTTGAGCGGAGCAATTCGAGTTAATCCCTGGAATATTGATGTTGTAGCTGATGCAATGGAATGTGCATTGGAGATGGAAGATGCGGAGAAGCAACTCCGCCATGAGAAGCATTTTAGATATGTGAGCACGCATGATGTCGGGTATTGGGCTCGGAGTTTCCTACAAGATTTGGAGAGGACTTGTAGGGATCATGTGAGGCAGAGATGTTGGGGTATTGGGTTTGGTTTAAGTTTTCGAGTCGTGGCTCTTGATCCGAACTTCAGGAAGCTCGCAATGGAACACATAATTTCGACTTATAAGAGAACGAAATCTCGGGCAATTCTTTTGGACTACGATGGTACATTAATGCCTCAAGCTTTGATTGACAAGAGTCCTACTTCGAAATGCCTCGAAACTCTTAATACCTTATGTCGGGATAAGAACAATATGGTGTTCATTGTGAGTGCAAAAAGTCGTAAGACGCTTGATGAATGGTTTGCGCCTTGCGAAAATCTCGGCATTGCTGCTGAGCACGGATACTTTATTAGGTTAAAGCAGGATGAAGAATGGGAAAGCAGTTTGCCAGTTGCAGATTGCTGTTGGAAGCAGATTGTGCAGCCAGTGATGAAACTCTACACTGAAACAACTGATGGATCGACAATCGAAGATCGAGAAACTGCGCTCGGATGGTGTTATGAAGATGCAGATCCGGATTTCGGTTCGTGTCAGGCTAAGGAGCTCTTCGATCATCTCGAAAGTGTCCTAGCCAACGAACCAGTTACTGTCAAAAGTGGTCAAAACATTGTGGAAGTTAAACCACAGGTTCAACCTCATTGCCTTCATCTTTTAAATTATCATTGTTTCTAA 2331 45.69 MVSRSYSNLLELATGESPSFGRINRQIPRIMTVAGLISDIDDDPSESVSSEPSSSSAPRDRIIIVANELPIRAHRKTGSGGATAGWTFSWDENSLLLQLKDGLGDDDFEVFYVGCLKEDIHPNEQDEVSQILLETFKCVPTFLTQELYTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTISIKILPVGIHMGQLQSVLSLQKTEEKVSELIKQFRDRDRIMLLGVDDMDIFKGISLKLLAMEQLLITHPEWQGKVVLVQIANPARGRGKDVKEVQDETKATVKRINDVFGRPGYEPVVLIEEPLKFYERVAYYTVAECCLVTAVRDGMNLIPYEYIVSRQGNDKLDKLLGWESSAPKKSMLVISEFIGCSPSLSGAIRVNPWNIDVVADAMECALEMEDAEKQLRHEKHFRYVSTHDVGYWARSFLQDLERTCRDHVRQRCWGIGFGLSFRVVALDPNFRKLAMEHIISTYKRTKSRAILLDYDGTLMPQALIDKSPTSKCLETLNTLCRDKNNMVFIVSAKSRKTLDEWFAPCENLGIAAEHGYFIRLKQDEEWESSLPVADCCWKQIVQPVMKLYTETTDGSTIEDRETALGWCYEDADPDFGSCQAKELFDHLESVLANEPVTVKSGQNIVEVKPQVQPHCLHLLNYHCF 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18882171 18885972 - Tan0016358.2 Tan04g1480 749884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1480 776 FunFam Trehalose-6-phosphate synthase 2 683 762 - -
Tan04g1480 776 Gene3D - 682 762 - -
Tan04g1480 776 Gene3D Glycogen Phosphorylase B; 320 537 - -
Tan04g1480 776 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 318 - -
Tan04g1480 776 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 762 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
Tan04g1480 776 Pfam Glycosyltransferase family 20 61 553 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Tan04g1480 776 Pfam Trehalose-phosphatase 603 763 IPR003337 GO:0005992(InterPro)
Tan04g1480 776 Gene3D - 602 681 IPR023214 -
Tan04g1480 776 SUPERFAMILY HAD-like 600 762 IPR036412 -
Tan04g1480 776 CDD GT20_TPS 61 553 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Tan04g1480 776 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 599 716 - -
Tan04g1480 776 FunFam Alpha,alpha-trehalose-phosphate synthase 320 537 - -
Tan04g1480 776 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 556 - -
Tan04g1480 776 Gene3D Glycogen Phosphorylase B; 54 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2599 Tan-Chr3:79127018 Tan04g1480 Tan-Chr4:18882171 1.1e-311 dispersed
Tan04g1480 Tan-Chr4:18882171 Tan09g2228 Tan-Chr9:72247966 4.70E-281 dispersed
Tan04g1479 Tan-Chr4:18882171 Tan04g1480 Tan-Chr4:18882171 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1480 K16055 - vvi:100252552 1342.02