Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1496 ATGAACAAAAAACATTATACTAACACTATCGTCTATCAGTTCTCACGTTGTGGCAAATTCGTAATTTTGTGTTGGGATAGGGGCATTTTCCTTCACCGCCATTCAGCAAATAAATATCTCAAAGGCTCTGTCCAATCACTTCAGGTTCTGACGGAAGAAAGAAAGCGGCGAAAACCAATGGCGAAAAACGATGATGAACCGGAGGTTCAGAGCTCCGGCAAGAGGCTAAAATGCTCCAAGTACGTTGACGAACAACTCGAAAATGAAGAAGAAGAAGAAGAAGAGCAGGTAAGCGAGCTTCCATTGAAGCCTGGCCTGTTCTTCTACCCAATGACTCCAACTTCCTTCGTGGTCTCCGATGCTCTCGAGCCCGATTTCCCCATCATCTACGTCAACAAAGTCTTCGAGATCTTCACTGGATACCGCGCTGATGAGGTCCTCGGCCAGAATTGTCGGTTCTTACAGTATAGAGACCCTCGTGCACAGCGGCGTCATCCTTTGGTAGATCCTGTGGTTGTTTCTGAAATCAGAAGAGGTCTTGAAGAAGGTGTTGAATTCCAAGGTGAACTTCTCAATTTCAGAAAGGATGGCACCCCTATGGTGAACAGGTTACGACTTGCACCCATACATGATGATGATGGTACTGTAACACACATTATAGGAATTCAAGTGTTTTCTGAGACAAAGATAGATCTTAATCGGTTGTCATATCCCGTTTTCAAAGAAACTTGCGCCAAAAAATATGATCTATCAGGCAAAAGTGCTCATCTGATTGATCAATCACCATTTGGTCAGCATAAAGAAATCTGTGGGATACTACAGCTTTCAGATGAAGTCTTGGCCCATAATATCTTATCACGCTTGACACCAAGAGATGTTGCATCTGTTGGGTCAGTCTGCCGAAGGATTCGTCAGTTAACGAAGAATGAGCATTTAAGGAAGATGGTATGTCAGAATGCATGGGGAAGAGAAGTGACTGGAACATTGGAACAAATGACAAAGAAACTCGGTTGGGGGCGCTTGGCCAGGGAACTTACAACTCTTGAAGCTGTATGTTGGAGAAAACTCACAGTTGGGGGAGCTGTGGAGCCTTTACGTTGCAACTTTAGTGCTTGTGCTGCAGGTAATCGACTTGTATTATTCGGCGGGGAAGGAGTCAATATGCAGCCCATGGATGATACCTTTGTTCTCAATCTTGATGCTGCAAATCCGGAGTGGCGCAGAATAAGCGTGAAATCCTCCCCACCTGGACGTTGGGGCCACACTCTATCATGTTTGAATGGTTCTTGGTTAGTAGTTTTTGGTGGTTGTGGCAGTCAAGGACTGCTCAACGACGTGTTTGTACTTGATTTGGATGCTCAGCAACCAACATGGAAAGAAATCTCTGGTGGAGCTCCACCATTGCCTAGATCCTGGCATAGCTCCTGTATGATCGAAGGTTCTAAACTGGTTGTTTCAGGTGGATGCACAGATGCCGGGGTCCTTCTCAGTGACACGTACTTGTTGGATCTAACAACAGACAAGCCAACCTGGAGAGAGATTCCCACATCCGGGACTCCCCCTTCTAGATTGGGACATTCTCTTTCAGTTTATGGTCGGACAAAGATTCTAATGTTTGGTGGACTTGCCAAGAGCGGACACTTACGCTTGCGATCAGGTGAGGCGTACACCATAGATTTAGAAGAGGAAAATCCACGGTGGAGGCAACTCGAGTGCAGTGCATTCACTGGCATTGGTGGTCAGAGTGCAGTGGTTCCTCCTCCAAGACTCGATCACGTAGCAGTCAGCATGCCCTGTGGAAGGATTATCATTTTCGGAGGCTCCATTGCCGGGTTACATTCGCCTTCTCAACTATTTCTTTTGGATCCGGCCGAGGAGAAACCGTCATGGAGAATTCTCAACGTTCCTGGACAGCCACCCAAATTTGCTTGGGGCCATAGTACGTGTGTGGTTGGAGGGACAAGAGTTTTGGTATTGGGCGGCCACACTGGGGAAGAATGGATACTCAATGAATTGCACGAACTCTGCTTAGCTAGCAGGCAAGATTCAGATCTTTGA 2058 46.5 MNKKHYTNTIVYQFSRCGKFVILCWDRGIFLHRHSANKYLKGSVQSLQVLTEERKRRKPMAKNDDEPEVQSSGKRLKCSKYVDEQLENEEEEEEEQVSELPLKPGLFFYPMTPTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQNCRFLQYRDPRAQRRHPLVDPVVVSEIRRGLEEGVEFQGELLNFRKDGTPMVNRLRLAPIHDDDGTVTHIIGIQVFSETKIDLNRLSYPVFKETCAKKYDLSGKSAHLIDQSPFGQHKEICGILQLSDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNAWGREVTGTLEQMTKKLGWGRLARELTTLEAVCWRKLTVGGAVEPLRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRISVKSSPPGRWGHTLSCLNGSWLVVFGGCGSQGLLNDVFVLDLDAQQPTWKEISGGAPPLPRSWHSSCMIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPTWREIPTSGTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEEENPRWRQLECSAFTGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19791082 19794594 + Tan0021016.1 Tan04g1496 749900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1496 685 CDD F-box_AtADO-like 271 317 - -
Tan04g1496 685 Pfam Galactose oxidase, central domain 431 476 - -
Tan04g1496 685 Pfam Galactose oxidase, central domain 480 531 - -
Tan04g1496 685 FunFam Putative LOV domain-containing protein 549 681 - -
Tan04g1496 685 CDD PAS 112 222 IPR000014 -
Tan04g1496 685 Gene3D PAS domain 110 234 - -
Tan04g1496 685 FunFam Putative LOV domain-containing protein 343 548 - -
Tan04g1496 685 Pfam F-box-like 281 318 IPR001810 GO:0005515(InterPro)
Tan04g1496 685 Gene3D - 266 316 - -
Tan04g1496 685 Pfam Galactose oxidase, central domain 366 416 - -
Tan04g1496 685 ProSiteProfiles PAS repeat profile. 128 183 IPR000014 -
Tan04g1496 685 Gene3D - 319 672 IPR037293 -
Tan04g1496 685 FunFam Adagio protein 1 106 234 - -
Tan04g1496 685 SUPERFAMILY PYP-like sensor domain (PAS domain) 123 223 IPR035965 -
Tan04g1496 685 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 111 680 - GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007623(PANTHER)|GO:0009637(PANTHER)|GO:0019005(PANTHER)
Tan04g1496 685 SMART pac_2 187 228 IPR001610 -
Tan04g1496 685 MobiDBLite consensus disorder prediction 53 75 - -
Tan04g1496 685 Pfam PAS domain 122 223 IPR000014 -
Tan04g1496 685 Pfam Kelch motif 590 637 IPR011498 GO:0005515(InterPro)
Tan04g1496 685 NCBIfam PAS domain S-box protein 127 222 IPR000014 -
Tan04g1496 685 SUPERFAMILY F-box domain 267 324 IPR036047 GO:0005515(InterPro)
Tan04g1496 685 SUPERFAMILY Galactose oxidase, central domain 353 670 IPR011043 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1496 K12116 - - csv:101222712 1226.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1496 Tan-Chr4:19791082 Tan08g0849 Tan-Chr8:10565517 1.60E-240 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34