Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1539 ATGACGAAGTCCAAGAGTTTGTTACAGAACCTCATGAGACCATTCAGATTCGGTTCCTCAAGAGACAGCCAGGGCGAGGAGGATTTGGAGCAGATTGCAGCTAAGGAACAGAAGGTTATTCCATTCGAAACCTTAGCTGAAGCTACCAACAACTTTCATCAAAATCACAAGCTCGGCGAAGGCGGGTTTGGTCCAGTTTACAAGGGGAAGCTAAAGGATGGAAGAATTATTGCAGTTAAGAAGTTATCGCATTATTCAAAACAAGGGAGAAGGGAGTTTATGACTGAGGCCAAGTTGTTGGCTCGTGTGCAGCACAGAAATGTCGTCAATTTGTTGGGATACTGTGTTCATGGTTCGGAGAAACTACTGGTTTATGAATACGTCACGAATGAGAGCCTTGACAAGCTTCTCTTTAAATCCAGCAGACGTGGAGAACTCGATTGGAAGAGGAGGTATGACATAATCTTTGGCATAGCACGAGGCTTGCAATATCTTCATGTAGACTCGCATAATGTCATTATCCATCGTGATATTAAAGCTAGTAACATTTTGTTGGACGATAAATGGGTCCCTAAAATTGCTGATTTTGGCATGGCCCGTCTCTTCCCTGAAGATCAAACTCATGTCAATACTCGTGTTGCTGGTACAAATGGATATATGGCTCCTGAATATGTAATGCACGGGCATCTATCAGCAAAGGCAGATGTTTTTAGCTTTGGTGTTTTGGTCCTTGAACTCATCAGTGGTCAGCGGAACTCGTCATTTAGTTCATTTGTGGAAGCCGAGAATCTACTTGATTGGGCGTACAAGCTACACAAGAAGGGCAGGAGCTTGGAGATCATGGACCCAACATTAGCATCCTCAGCTGTTCCTGACCAAATTTCAATGTGCATTCAGATAGGATTGCTGTGCACACAAGGGGATCCGCAACTACGGCCGACCATGCCACGTGTAGTTTTGATCCTTTCGAAGAGACCTGGTACTTTAGAGGAACCAACGAGACCAGGAATACCCGGTTCTCGGTATAGAAGATCTCGTAGGACAAGTGTATCGTCTTCCAATGCTGGTACTTCTGGTGCATCTGATTCTTATGCTTCAACGACCAATACTGTTACAGGAACTATAACTCAAACTGAAACTGCAACTGCAACTGCAACCGCAACCGCAAATGTGACCGAAATTGCTTCTGGTTCTTCTTCAGTTAGTCGAGGATATAATGATACTCGTGGGAAACGTCCCATGGAAGGTTAG 1251 44.44 MTKSKSLLQNLMRPFRFGSSRDSQGEEDLEQIAAKEQKVIPFETLAEATNNFHQNHKLGEGGFGPVYKGKLKDGRIIAVKKLSHYSKQGRREFMTEAKLLARVQHRNVVNLLGYCVHGSEKLLVYEYVTNESLDKLLFKSSRRGELDWKRRYDIIFGIARGLQYLHVDSHNVIIHRDIKASNILLDDKWVPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSAKADVFSFGVLVLELISGQRNSSFSSFVEAENLLDWAYKLHKKGRSLEIMDPTLASSAVPDQISMCIQIGLLCTQGDPQLRPTMPRVVLILSKRPGTLEEPTRPGIPGSRYRRSRRTSVSSSNAGTSGASDSYASTTNTVTGTITQTETATATATATANVTEIASGSSSVSRGYNDTRGKRPMEG 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23105105 23109592 + Tan0018265.1 Tan04g1539 749943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1539 416 Pfam Protein kinase domain 52 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1539 416 SUPERFAMILY Protein kinase-like (PK-like) 38 338 IPR011009 -
Tan04g1539 416 MobiDBLite consensus disorder prediction 344 367 - -
Tan04g1539 416 ProSiteProfiles Protein kinase domain profile. 52 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1539 416 Gene3D Phosphorylase Kinase; domain 1 17 127 - -
Tan04g1539 416 MobiDBLite consensus disorder prediction 379 416 - -
Tan04g1539 416 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Tan04g1539 416 Gene3D Transferase(Phosphotransferase) domain 1 128 330 - -
Tan04g1539 416 CDD STKc_IRAK 58 324 - -
Tan04g1539 416 MobiDBLite consensus disorder prediction 326 367 - -
Tan04g1539 416 MobiDBLite consensus disorder prediction 379 406 - -
Tan04g1539 416 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 358 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Tan04g1539 416 SMART serkin_6 52 321 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1539 416 FunFam Cysteine-rich receptor-like protein kinase 10 129 334 - -
Tan04g1539 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1539 Tan-Chr4:23105105 Tan05g3131 Tan-Chr5:83423345 4.60E-89 dispersed
Tan04g1539 Tan-Chr4:23105105 Tan03g2388 Tan-Chr3:77627159 3.10E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67460 PF00069 Pkinase 1.50E-50 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1539 - - - 0.0