Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1549 ATGGCGTCGGCCACTTTGAGCACTTCCACAACAACACGTCTTAAACCCACCACAAGGGGAGAATCATTATCAAATCTGATTCCGAACGGACCCTTTAATCCGAAGGTGATTAGTTTCGCGTTTTTTAAACGCGCCGCTGCGAGAGGAGTGGCGGCTTCAGTGAGGGCGACGTGGAGAACGGTGGAGCACGGCGGGGCGGTGGCGGCGGAGGAGGAGATGGGGAAGATACGGCGGCTGCAGAATGGGTCGGACGTGAGAGGGGTGGCACTGGAGGGGGAGAAGGGGAGGGCGGTGGATCTGACGGCGGCGGCGGTGGAGGCCATTGCGGAGAGTTTTGGGGAGTGGGTGATGGAGGGGTTAGAGAAGGAGACAGGGCGGCGCGTGAGTGTTTCGGTGGGGAGAGACCCGAGGATTTCGGGCAGTGCTTTGAGTGTTGCAGTGTTCGCGGGAGTTAGTAGGGCGGGGTGTTTGGTGTTCGATATGGGACTTGCCACCACGCCGGCGTGCTTTATGAGCACCGTTTTGCCTCCTTTTTCTTATGATGCTTCCATTATGTTGACAGCATCTCACTTACCATATACACGAAATGGGATGAAGTTTTTCACGAAGAGAGGAGGGCTGAGCTCGCCGGAGGTGGAGGAGATATGCAACAGAGCCGCCGTGAAGTACGCCAACAGAGTGGTCAAAGTCTCCACCCTTCTCCGAACGCCGCCGTCCAGGGTGGATTTCATGGCGGCTTATTCTCAGCATCTCAAAGATATCATTAAGCAAAGAATCAACCATCCTTTGCATTATGACACTCCTCTTCAAGGATTTCAGATAATAGTGAATGCCGGTAACGGATCAGGAGGCTTCTTCACATGGGATGTCTTGGACAAGCTTGGCGCAGACACCTTTGGCTCCCTCCATCTCAACCCAGACGGCATGTTCCCCAACCACATCCCCAACCCAGAGGACAAAACTGCCATGTCACTCACCCGAGCCGCAGTCCTCAAACACAAAGCCGACCTCGGCATTGTCTTCGACACCGATGTCGACCGCAGCGGTGTCGTCGACCACGAGGGCAACCCAATCAACGGTGACAAACTCATTGCCCTAATGTCGGCCATCGTCCTCCGAGAGCACCCTGGCAGCTCAATTGTCACCGATGCCCGCACGAGCGTCGCCCTCACCAAGTTCATCACCAATCGAGGCGGGCAGCATTGCCTGTACCGTGTCGGGTATCGTAATGTGATCGACAAAGGAATTCAGCTGAATGACGATGGGGTCGAGACACATTTGATGATGGAGACATCAGGGCATGGGGCGCTTAAGGAGAACTATTTTTTGGATGATGGGGCTTACATGGTAGTGAAGATTATCATTGAAATGGTGAGAATGAAGGTTGAGGGATCAGATGAAGGGATTGGGAGTCTTATAAAAGATCTCGAAGAGCCATTGGAGTCTGTGGAATTGAGATTGAATGTGATCTCTGAGCCAAGATTTGCCCAAGCAAAGGCTGTGGAGGTCATTGAAACATTCAGAAACTTTGTCCAGGTATTATATATAATTTTACTACAATACATTAAACTGAGGTTGGTTTATAACGTTTTTTGTTTTTTTGGAAAAAATTTGATGCATCCTCAAGCTGCCCTCATCTTTTTATAG 1647 51.67 MASATLSTSTTTRLKPTTRGESLSNLIPNGPFNPKVISFAFFKRAAARGVAASVRATWRTVEHGGAVAAEEEMGKIRRLQNGSDVRGVALEGEKGRAVDLTAAAVEAIAESFGEWVMEGLEKETGRRVSVSVGRDPRISGSALSVAVFAGVSRAGCLVFDMGLATTPACFMSTVLPPFSYDASIMLTASHLPYTRNGMKFFTKRGGLSSPEVEEICNRAAVKYANRVVKVSTLLRTPPSRVDFMAAYSQHLKDIIKQRINHPLHYDTPLQGFQIIVNAGNGSGGFFTWDVLDKLGADTFGSLHLNPDGMFPNHIPNPEDKTAMSLTRAAVLKHKADLGIVFDTDVDRSGVVDHEGNPINGDKLIALMSAIVLREHPGSSIVTDARTSVALTKFITNRGGQHCLYRVGYRNVIDKGIQLNDDGVETHLMMETSGHGALKENYFLDDGAYMVVKIIIEMVRMKVEGSDEGIGSLIKDLEEPLESVELRLNVISEPRFAQAKAVEVIETFRNFVQVLYIILLQYIKLRLVYNVFCFFGKNLMHPQAALIFL 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23296769 23302646 - Tan0016367.2 Tan04g1549 749953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1549 548 PRINTS Phosphoglucomutase/phosphomannomutase family signature 271 290 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Tan04g1549 548 PRINTS Phosphoglucomutase/phosphomannomutase family signature 306 319 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Tan04g1549 548 PRINTS Phosphoglucomutase/phosphomannomutase family signature 335 350 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Tan04g1549 548 PRINTS Phosphoglucomutase/phosphomannomutase family signature 182 196 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Tan04g1549 548 SUPERFAMILY Phosphoglucomutase, first 3 domains 83 255 IPR016055 GO:0005975(InterPro)|GO:0016868(InterPro)
Tan04g1549 548 CDD PMM_PGM 79 512 - -
Tan04g1549 548 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 359 460 IPR005846 GO:0005975(InterPro)|GO:0016868(InterPro)
Tan04g1549 548 SUPERFAMILY Phosphoglucomutase, first 3 domains 359 461 IPR016055 GO:0005975(InterPro)|GO:0016868(InterPro)
Tan04g1549 548 PANTHER PHOSPHOHEXOSE MUTASE 70 509 IPR050060 GO:0004615(PANTHER)|GO:0009570(PANTHER)
Tan04g1549 548 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 79 218 IPR005844 GO:0005975(InterPro)|GO:0016868(InterPro)
Tan04g1549 548 MobiDBLite consensus disorder prediction 1 27 - -
Tan04g1549 548 Gene3D - 79 230 - -
Tan04g1549 548 FunFam phosphomannomutase/phosphoglucomutase isoform X1 273 350 - -
Tan04g1549 548 SUPERFAMILY Phosphoglucomutase, first 3 domains 246 357 IPR016055 GO:0005975(InterPro)|GO:0016868(InterPro)
Tan04g1549 548 Gene3D - 352 474 - -
Tan04g1549 548 FunFam phosphomannomutase/phosphoglucomutase isoform X1 80 232 - -
Tan04g1549 548 Gene3D - 273 351 - -
Tan04g1549 548 FunFam Phosphomannomutase/phosphoglucomutase isoform B 352 473 - -
Tan04g1549 548 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 247 355 IPR005845 GO:0005975(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1549 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1549 Tan-Chr4:23296769 Tan11g0857 Tan-Chr11:7025403 4.60E-105 dispersed
Tan04g1548 Tan-Chr4:23292207 Tan04g1549 Tan-Chr4:23296769 1.30E-292 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g450 . . . . . . Bma14g01883 . . . . . . . Sed01g2847 . . Bhi07g00357 Tan04g1549 Cmetu10g0494 . Hepe01g0551 . . Cla07g00577 Cam07g0604 Cec07g0674 Cco07g0644 Clacu07g0608 Cmu07g0641 Cre07g0980 Cone13ag0751 . . . Lsi04g01125 . Chy10g00233 Cme10g01586 . Blo11g00979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009666 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 2 1 33