Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1579 ATGGCCGGAATTGTCGCCGGCGACAGCGACAGTCCACCGGCTGTGGCTCTACTGGACTTTGTTCGCGATGTCGTTCGAATGTCGGCGGGGACGAACACTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCACTTGTTTGAGGAGATCAGAGACTTCAAAGGTGTCCAATTTCGACCTGTTGATGCATCTTGCTCTTCTTCTTCTGCTTCATCTTGTGGTGCTGTTACCGGGAGGGATTCGTCTCCGAGTCCGTGGCTGTGTGATTTAGTGTCGGCATTGAAGGATGCTAAGCGCCTCGTTTTCATCGCTTCGACTTTCCGGTCCTGCAGTTCTTCTTCTGAGGAAGTTGCCAAGAAGGTACTCTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGAAATCTTCCTTATGATCGCTTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAGTTGAGAAGAGCAGCAGAAAAATATGGCTCTCTGACTGCAATTCCGCCGTCAGTTGTTCAATCTCAGTTGCTAAAGAAAAGCATGGATATATTGAATCTGAACAACTGGGCTGATAACTTTGATGTTGAGGAGAATGGTGTTGTTGATCATGAGATTACAGTGAAATTTGATGCATTTCCAAATTGTAGAGACTTGATGAATAATGGTGTGGATCAGATGATTTTCAAAGGACTTGAGAAGAAACTTCCATCCCCCTCAGAGGCTTGTTCTGATGAACAGGATGACTCTACCAGGAAGAGTGGAGACCAGATGAAGAGCTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCTTGGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGACAGACGTACGAGAGATCTTATGTTCAAAGGTGGATAGACTGTGGGAATACTACTTGCCCCAAAACTCAGCAGAAGCTTCAAAACTTGACTCTCACCCCAAATTATGTTCTGCGAAGTCTTATTAGTCAATGGTGTGCTAATCACAATATTGAGCAACCAACAGGATTAACCAATGGAAAGATCAAAAAGTGTGATGGATCATACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTTAGTAGCCATTCAATCGAGGAGCGGAGAGCTTCCGTGACCGAACTTCGATCTCTATCGAAAAGAAGCACAGACAATAGAATACTGATAGCCGAAGCAGGAGCAATTCCAAATTTGGTCCATTTGTTAACTTCTGATGATGTTCTAATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCTATATATGAGAACAACAAGGGACTAATTATGCTTGCTGGTGCAGTACCTTCCATTGTCCAAGTTCTGAGAGTTGGAAGCATGGAAGCGAGAGAAAATTCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATAATTGGAGCTTCTGGGGCCATTCCAGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGGAAGAAAGATGCTGCAACAGCACTATTTAATTTGTGTATTTATCAGGGAAACAAGGGAAGGTCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACAGACTCAGTTAACTCCATGGTCGACGAAGCTCTCACGATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTGGCCATGGTGAAGGCCAGTACCATACCTGTTTTAATAGACCTGCTGAGGGCTGGATTGCCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTTTGTGTAAACGAGATACTGACAATCTTTCTTGCATAAGTAGGCTTGGCGCCATGATTCCGCTGACCGAGCTTGCCAAGAGCGGCACAGAGAGAGCGAAAAGGAAAGCTACCTCACTGTTGGAGCATCTCCGAAAACTACAGCAGCTATAG 1980 44.7 MAGIVAGDSDSPPAVALLDFVRDVVRMSAGTNTGEVFKKDCTDLVRRIVLLTHLFEEIRDFKGVQFRPVDASCSSSSASSCGAVTGRDSSPSPWLCDLVSALKDAKRLVFIASTFRSCSSSSEEVAKKVLFQFQCVTWKLEKALGNLPYDRFDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKSMDILNLNNWADNFDVEENGVVDHEITVKFDAFPNCRDLMNNGVDQMIFKGLEKKLPSPSEACSDEQDDSTRKSGDQMKSSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCANHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLSSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPNLVHLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENSAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRSVRAGIIPALLKMLTDSVNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRAGLPRNKENAAAILLALCKRDTDNLSCISRLGAMIPLTELAKSGTERAKRKATSLLEHLRKLQQL 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25117845 25121612 - Tan0006985.1 Tan04g1579 749983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1579 659 Gene3D - 363 454 IPR011989 -
Tan04g1579 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 420 462 IPR000225 GO:0005515(InterPro)
Tan04g1579 659 MobiDBLite consensus disorder prediction 253 270 - -
Tan04g1579 659 FunFam RING-type E3 ubiquitin transferase 363 456 - -
Tan04g1579 659 Pfam Armadillo/beta-catenin-like repeat 492 530 IPR000225 GO:0005515(InterPro)
Tan04g1579 659 Pfam Armadillo/beta-catenin-like repeat 409 448 IPR000225 GO:0005515(InterPro)
Tan04g1579 659 Gene3D - 559 658 IPR011989 -
Tan04g1579 659 Coils Coil 155 175 - -
Tan04g1579 659 MobiDBLite consensus disorder prediction 250 280 - -
Tan04g1579 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 353 IPR013083 -
Tan04g1579 659 SMART Ubox_2 283 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g1579 659 Gene3D - 455 558 IPR011989 -
Tan04g1579 659 CDD RING-Ubox_PUB 281 333 IPR045210 -
Tan04g1579 659 SMART arm_5 573 613 IPR000225 GO:0005515(InterPro)
Tan04g1579 659 SMART arm_5 532 572 IPR000225 GO:0005515(InterPro)
Tan04g1579 659 SMART arm_5 615 655 IPR000225 GO:0005515(InterPro)
Tan04g1579 659 SMART arm_5 491 531 IPR000225 GO:0005515(InterPro)
Tan04g1579 659 SMART arm_5 450 490 IPR000225 GO:0005515(InterPro)
Tan04g1579 659 SMART arm_5 409 449 IPR000225 GO:0005515(InterPro)
Tan04g1579 659 FunFam RING-type E3 ubiquitin transferase 457 557 - -
Tan04g1579 659 SUPERFAMILY RING/U-box 270 353 - -
Tan04g1579 659 Coils Coil 639 659 - -
Tan04g1579 659 Pfam U-box domain 280 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g1579 659 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g1579 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 502 529 IPR000225 GO:0005515(InterPro)
Tan04g1579 659 PANTHER U BOX DOMAIN-CONTAINING 36 655 - -
Tan04g1579 659 SUPERFAMILY ARM repeat 370 653 IPR016024 -
Tan04g1579 659 FunFam RING-type E3 ubiquitin transferase 279 354 - -
Tan04g1579 659 FunFam RING-type E3 ubiquitin transferase 559 658 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1579 Tan-Chr4:25117845 Tan05g0377 Tan-Chr5:2751092 6.30E-08 dispersed
Tan06g1828 Tan-Chr6:43781369 Tan04g1579 Tan-Chr4:25117845 2.50E-259 transposed
Tan09g0902 Tan-Chr9:60521317 Tan04g1579 Tan-Chr4:25117845 4.70E-14 transposed
Tan11g1796 Tan-Chr11:19512702 Tan04g1579 Tan-Chr4:25117845 2.00E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1579 - - - 0.0