Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g1579 | ATGGCCGGAATTGTCGCCGGCGACAGCGACAGTCCACCGGCTGTGGCTCTACTGGACTTTGTTCGCGATGTCGTTCGAATGTCGGCGGGGACGAACACTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCACTTGTTTGAGGAGATCAGAGACTTCAAAGGTGTCCAATTTCGACCTGTTGATGCATCTTGCTCTTCTTCTTCTGCTTCATCTTGTGGTGCTGTTACCGGGAGGGATTCGTCTCCGAGTCCGTGGCTGTGTGATTTAGTGTCGGCATTGAAGGATGCTAAGCGCCTCGTTTTCATCGCTTCGACTTTCCGGTCCTGCAGTTCTTCTTCTGAGGAAGTTGCCAAGAAGGTACTCTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGAAATCTTCCTTATGATCGCTTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAGTTGAGAAGAGCAGCAGAAAAATATGGCTCTCTGACTGCAATTCCGCCGTCAGTTGTTCAATCTCAGTTGCTAAAGAAAAGCATGGATATATTGAATCTGAACAACTGGGCTGATAACTTTGATGTTGAGGAGAATGGTGTTGTTGATCATGAGATTACAGTGAAATTTGATGCATTTCCAAATTGTAGAGACTTGATGAATAATGGTGTGGATCAGATGATTTTCAAAGGACTTGAGAAGAAACTTCCATCCCCCTCAGAGGCTTGTTCTGATGAACAGGATGACTCTACCAGGAAGAGTGGAGACCAGATGAAGAGCTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCTTGGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGACAGACGTACGAGAGATCTTATGTTCAAAGGTGGATAGACTGTGGGAATACTACTTGCCCCAAAACTCAGCAGAAGCTTCAAAACTTGACTCTCACCCCAAATTATGTTCTGCGAAGTCTTATTAGTCAATGGTGTGCTAATCACAATATTGAGCAACCAACAGGATTAACCAATGGAAAGATCAAAAAGTGTGATGGATCATACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTTAGTAGCCATTCAATCGAGGAGCGGAGAGCTTCCGTGACCGAACTTCGATCTCTATCGAAAAGAAGCACAGACAATAGAATACTGATAGCCGAAGCAGGAGCAATTCCAAATTTGGTCCATTTGTTAACTTCTGATGATGTTCTAATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCTATATATGAGAACAACAAGGGACTAATTATGCTTGCTGGTGCAGTACCTTCCATTGTCCAAGTTCTGAGAGTTGGAAGCATGGAAGCGAGAGAAAATTCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATAATTGGAGCTTCTGGGGCCATTCCAGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGGAAGAAAGATGCTGCAACAGCACTATTTAATTTGTGTATTTATCAGGGAAACAAGGGAAGGTCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACAGACTCAGTTAACTCCATGGTCGACGAAGCTCTCACGATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTGGCCATGGTGAAGGCCAGTACCATACCTGTTTTAATAGACCTGCTGAGGGCTGGATTGCCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTTTGTGTAAACGAGATACTGACAATCTTTCTTGCATAAGTAGGCTTGGCGCCATGATTCCGCTGACCGAGCTTGCCAAGAGCGGCACAGAGAGAGCGAAAAGGAAAGCTACCTCACTGTTGGAGCATCTCCGAAAACTACAGCAGCTATAG | 1980 | 44.7 | MAGIVAGDSDSPPAVALLDFVRDVVRMSAGTNTGEVFKKDCTDLVRRIVLLTHLFEEIRDFKGVQFRPVDASCSSSSASSCGAVTGRDSSPSPWLCDLVSALKDAKRLVFIASTFRSCSSSSEEVAKKVLFQFQCVTWKLEKALGNLPYDRFDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKSMDILNLNNWADNFDVEENGVVDHEITVKFDAFPNCRDLMNNGVDQMIFKGLEKKLPSPSEACSDEQDDSTRKSGDQMKSSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCANHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLSSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPNLVHLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENSAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRSVRAGIIPALLKMLTDSVNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRAGLPRNKENAAAILLALCKRDTDNLSCISRLGAMIPLTELAKSGTERAKRKATSLLEHLRKLQQL | 659 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25117845 | 25121612 | - | Tan0006985.1 | Tan04g1579 | 749983 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g1579 | 659 | Gene3D | - | 363 | 454 | IPR011989 | - | |
Tan04g1579 | 659 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 420 | 462 | IPR000225 | GO:0005515(InterPro) | |
Tan04g1579 | 659 | MobiDBLite | consensus disorder prediction | 253 | 270 | - | - | |
Tan04g1579 | 659 | FunFam | RING-type E3 ubiquitin transferase | 363 | 456 | - | - | |
Tan04g1579 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 492 | 530 | IPR000225 | GO:0005515(InterPro) | |
Tan04g1579 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 409 | 448 | IPR000225 | GO:0005515(InterPro) | |
Tan04g1579 | 659 | Gene3D | - | 559 | 658 | IPR011989 | - | |
Tan04g1579 | 659 | Coils | Coil | 155 | 175 | - | - | |
Tan04g1579 | 659 | MobiDBLite | consensus disorder prediction | 250 | 280 | - | - | |
Tan04g1579 | 659 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 353 | IPR013083 | - | |
Tan04g1579 | 659 | SMART | Ubox_2 | 283 | 346 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan04g1579 | 659 | Gene3D | - | 455 | 558 | IPR011989 | - | |
Tan04g1579 | 659 | CDD | RING-Ubox_PUB | 281 | 333 | IPR045210 | - | |
Tan04g1579 | 659 | SMART | arm_5 | 573 | 613 | IPR000225 | GO:0005515(InterPro) | |
Tan04g1579 | 659 | SMART | arm_5 | 532 | 572 | IPR000225 | GO:0005515(InterPro) | |
Tan04g1579 | 659 | SMART | arm_5 | 615 | 655 | IPR000225 | GO:0005515(InterPro) | |
Tan04g1579 | 659 | SMART | arm_5 | 491 | 531 | IPR000225 | GO:0005515(InterPro) | |
Tan04g1579 | 659 | SMART | arm_5 | 450 | 490 | IPR000225 | GO:0005515(InterPro) | |
Tan04g1579 | 659 | SMART | arm_5 | 409 | 449 | IPR000225 | GO:0005515(InterPro) | |
Tan04g1579 | 659 | FunFam | RING-type E3 ubiquitin transferase | 457 | 557 | - | - | |
Tan04g1579 | 659 | SUPERFAMILY | RING/U-box | 270 | 353 | - | - | |
Tan04g1579 | 659 | Coils | Coil | 639 | 659 | - | - | |
Tan04g1579 | 659 | Pfam | U-box domain | 280 | 351 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan04g1579 | 659 | ProSiteProfiles | U-box domain profile. | 279 | 353 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan04g1579 | 659 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 502 | 529 | IPR000225 | GO:0005515(InterPro) | |
Tan04g1579 | 659 | PANTHER | U BOX DOMAIN-CONTAINING | 36 | 655 | - | - | |
Tan04g1579 | 659 | SUPERFAMILY | ARM repeat | 370 | 653 | IPR016024 | - | |
Tan04g1579 | 659 | FunFam | RING-type E3 ubiquitin transferase | 279 | 354 | - | - | |
Tan04g1579 | 659 | FunFam | RING-type E3 ubiquitin transferase | 559 | 658 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g1579 | Tan-Chr4:25117845 | Tan05g0377 | Tan-Chr5:2751092 | 6.30E-08 | dispersed | |
Tan06g1828 | Tan-Chr6:43781369 | Tan04g1579 | Tan-Chr4:25117845 | 2.50E-259 | transposed | |
Tan09g0902 | Tan-Chr9:60521317 | Tan04g1579 | Tan-Chr4:25117845 | 4.70E-14 | transposed | |
Tan11g1796 | Tan-Chr11:19512702 | Tan04g1579 | Tan-Chr4:25117845 | 2.00E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g1579 | - | - | - | 0.0 |