Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1607 ATGGTTGACAAGGAATTTTTCACTGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTTATAGGTAGAGGGAGCTATGGGGTTGTTGCATCCGCCATAGACACTCACTCTGGTGAGAAAGTTGCCATCAAGAAGATTACTAATGTCTTCGAGCATGTTTCGGATGCCACACGGATTCTAAGAGAGATTAAGCTCCTTCGGTTTCTCCATCATCCTGATATTGTGGATATAAAACATATAATACTTCCTCCATCCAGAAGGGAGTTCAAAGATTTGTACATTGTTTTTGAGTTGATGGAGTCTGACCTTCATCATGTACTCAAGGCTAATGATGATCTCACCCCTCAACATCATCAATTTTTCTTGTATCAACTTCTTAGAGCCTTGAAGTATATACATTCAGCTCACGTGTTCCATAGAGATTTGAAGCCAAAGAATATACTTGCCAATGCAGACTGTAAACTGAAGATCTGTGACTTTGGGCTTGCTCGTGCTTCTTTTACTGATGCCCCATCTGCTATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCTTTTTTCTCAAAGTACACACCAGCTATTGATATTTGGAGCATAGGATGTATATTTGCTGAAATGTTGGCAGGCAAGCCATTGTTTCCTGGGAAAAGTGTTGTCCATGAGCTGGATTTAATAACCGACTTACTTGGTACTCCTTCGGCTGAATGTATTGCTAAGATTCGTAATGAAAAGGCTAAAAGATATTTGAATAGCATGAAAAAAAAGCATCCTATTCCTCTGTCAAGAAAGTTCCCTAATGCAGATCCACTAGCTCTTCGTTTACTTGAGCGTCTGCTTGCATTTGATCCTGATGATCGTCCTTCTGCAGAGGAGGCATTAGCTGATCCATATTTCCATGGACTGGCAAATGTGGAGGATGAACCATCCAGGCAACCTATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGATGTCAGAGAGCTTATTTATAGAGAAATTTTAGAGTATCATCCTCAAATGCTACAGGAGTACCTTCAAGGTTCTGAGAGTCACTTCTTGTATCCCAGTGGAATTGATCGATTCAAGCGTCAATTTGATCATCTTGAGGAACATTCTGGTAAAGGTGAGAGAGGCAGTCCACTCCTGAGGAAGTATGTCTCCTTGCCTAGGTATAACAACTAA 1224 40.44 MVDKEFFTEYGEATQYEIEEVIGRGSYGVVASAIDTHSGEKVAIKKITNVFEHVSDATRILREIKLLRFLHHPDIVDIKHIILPPSRREFKDLYIVFELMESDLHHVLKANDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFTDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLAGKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLNSMKKKHPIPLSRKFPNADPLALRLLERLLAFDPDDRPSAEEALADPYFHGLANVEDEPSRQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSESHFLYPSGIDRFKRQFDHLEEHSGKGERGSPLLRKYVSLPRYNN 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27652013 27658184 - Tan0004970.3 Tan04g1607 750011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1607 407 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 348 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Tan04g1607 407 FunFam Mitogen-activated protein kinase 331 353 - -
Tan04g1607 407 Pfam Protein kinase domain 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1607 407 SMART serkin_6 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1607 407 SUPERFAMILY Protein kinase-like (PK-like) 13 313 IPR011009 -
Tan04g1607 407 ProSitePatterns Protein kinases ATP-binding region signature. 22 46 IPR017441 GO:0005524(InterPro)
Tan04g1607 407 Gene3D Phosphorylase Kinase; domain 1 32 353 - -
Tan04g1607 407 ProSiteProfiles Protein kinase domain profile. 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1607 407 FunFam Mitogen-activated protein kinase 5 108 - -
Tan04g1607 407 CDD STKc_TDY_MAPK 15 352 - -
Tan04g1607 407 ProSitePatterns MAP kinase signature. 51 154 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g1607 407 FunFam Mitogen-activated protein kinase 102 330 - -
Tan04g1607 407 Gene3D Transferase(Phosphotransferase) domain 1 102 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1605 Tan-Chr4:27652013 Tan04g1607 Tan-Chr4:27652013 7.80E-131 dispersed
Tan04g1607 Tan-Chr4:27652013 Tan09g1832 Tan-Chr9:69723447 3.50E-203 dispersed
Tan04g1606 Tan-Chr4:27652013 Tan04g1607 Tan-Chr4:27652013 1.90E-237 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67463 PF00069 Pkinase 2.70E-67 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1607 - - - 0.0