Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1613 ATGGCGGTTCTACCAACCACCTCTTCAAGATTGGATCTCACCATCTCTATACCTGGCTTCAATTCATTCTCATCACCACTTCCTCCATCTGTAGTGAGAGATTTGGACATGAATAGAGCTCCAGATGAAGAGGAATGGATGATGGGAAGCATGGAGGAAGATGAAGAAAATAACAGTGGAAGCCATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAAGTTTCCGACAAAACCATACCTTAAACCCAAAACAAAAGGAGACTCTGGCAGAAGTGTTGAAGTTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCAAGGAGCAAGCTCAAGCAAACCGAAATGGAGTGCGAGTATCTAAAGAGATGGTTCGGGCTATTGACAGAACAGAATAAGAGACTGCAGAAGGAGGTGGAGGAGCTGAGGGCAATGAAGGTGGCGCCGCCGACAGTTATTTCACCGCACAGCTGCGAGCCGCTGCCGGCGTCCAACCTCACAATGTGCCCTCGCTGTGAGCGCGTGACTACCACCGCCCTCGACAAGACCCGCATTGTCGTTTAA 588 49.15 MAVLPTTSSRLDLTISIPGFNSFSSPLPPSVVRDLDMNRAPDEEEWMMGSMEEDEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV 195
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 28785786 28790609 + Tan0022173.1 Tan04g1613 750017
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1613 195 SMART HOX_1 62 124 IPR001356 GO:0003677(InterPro)
Tan04g1613 195 CDD homeodomain 63 121 IPR001356 GO:0003677(InterPro)
Tan04g1613 195 Coils Coil 133 153 - -
Tan04g1613 195 FunFam Homeobox-leucine zipper protein 18 49 125 - -
Tan04g1613 195 Gene3D - 56 128 - -
Tan04g1613 195 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 48 187 IPR050762 -
Tan04g1613 195 SMART halz 120 163 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1613 195 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan04g1613 195 SUPERFAMILY Homeodomain-like 50 121 IPR009057 -
Tan04g1613 195 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677(InterPro)
Tan04g1613 195 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1613 195 Pfam Homeodomain 64 118 IPR001356 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1613 Tan-Chr4:28785786 Tan11g1807 Tan-Chr11:20164424 3.70E-65 dispersed
Tan04g1613 Tan-Chr4:28785786 Tan01g1446 Tan-Chr1:14509664 9.40E-37 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27263 PF00046 Homeodomain 1.10E-16 CL0123 Tan TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1613 K09338 - csv:101222713 363.999