Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g1613 | ATGGCGGTTCTACCAACCACCTCTTCAAGATTGGATCTCACCATCTCTATACCTGGCTTCAATTCATTCTCATCACCACTTCCTCCATCTGTAGTGAGAGATTTGGACATGAATAGAGCTCCAGATGAAGAGGAATGGATGATGGGAAGCATGGAGGAAGATGAAGAAAATAACAGTGGAAGCCATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAAGTTTCCGACAAAACCATACCTTAAACCCAAAACAAAAGGAGACTCTGGCAGAAGTGTTGAAGTTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCAAGGAGCAAGCTCAAGCAAACCGAAATGGAGTGCGAGTATCTAAAGAGATGGTTCGGGCTATTGACAGAACAGAATAAGAGACTGCAGAAGGAGGTGGAGGAGCTGAGGGCAATGAAGGTGGCGCCGCCGACAGTTATTTCACCGCACAGCTGCGAGCCGCTGCCGGCGTCCAACCTCACAATGTGCCCTCGCTGTGAGCGCGTGACTACCACCGCCCTCGACAAGACCCGCATTGTCGTTTAA | 588 | 49.15 | MAVLPTTSSRLDLTISIPGFNSFSSPLPPSVVRDLDMNRAPDEEEWMMGSMEEDEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV | 195 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28785786 | 28790609 | + | Tan0022173.1 | Tan04g1613 | 750017 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g1613 | 195 | SMART | HOX_1 | 62 | 124 | IPR001356 | GO:0003677(InterPro) | |
Tan04g1613 | 195 | CDD | homeodomain | 63 | 121 | IPR001356 | GO:0003677(InterPro) | |
Tan04g1613 | 195 | Coils | Coil | 133 | 153 | - | - | |
Tan04g1613 | 195 | FunFam | Homeobox-leucine zipper protein 18 | 49 | 125 | - | - | |
Tan04g1613 | 195 | Gene3D | - | 56 | 128 | - | - | |
Tan04g1613 | 195 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 48 | 187 | IPR050762 | - | |
Tan04g1613 | 195 | SMART | halz | 120 | 163 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan04g1613 | 195 | ProSitePatterns | 'Homeobox' domain signature. | 95 | 118 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Tan04g1613 | 195 | SUPERFAMILY | Homeodomain-like | 50 | 121 | IPR009057 | - | |
Tan04g1613 | 195 | ProSiteProfiles | 'Homeobox' domain profile. | 60 | 120 | IPR001356 | GO:0003677(InterPro) | |
Tan04g1613 | 195 | Pfam | Homeobox associated leucine zipper | 120 | 154 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan04g1613 | 195 | Pfam | Homeodomain | 64 | 118 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g1613 | Tan-Chr4:28785786 | Tan11g1807 | Tan-Chr11:20164424 | 3.70E-65 | dispersed | |
Tan04g1613 | Tan-Chr4:28785786 | Tan01g1446 | Tan-Chr1:14509664 | 9.40E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27263 | PF00046 | Homeodomain | 1.10E-16 | CL0123 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g1613 | K09338 | - | csv:101222713 | 363.999 |