Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1690 ATGGCAGAGGTGATCGGTAGGAAGAGAAGGAGGGGCGGCCGCAGCGGTGGAGAGAGGGTGTTTAGGTTTAAGAGCTTTGGGGAGAATGGCCATCCTGCGGAGTTTGTGGGGCGATTCCGGGAGAATGTGGCGGCGCTGCTAGGGTTCGGGCAGTGGGAGAGTGGAGAGTGCGGCAGCGGGTTGCGGTGCTGGTCGTTTCGGCTGCAGGTTCAGCGACAGCCGCCTTTCCATGTCGTGATGTTTGTGGTCGAGGAGCTGGTCGAGGCGGTGACTCCGGCGGGGAGGCATTGTAAACATTGCCAGTATGTTGGGTGGGGACATCATATGATATGCAATAAAAAATATCACTTTGTGTTGCCATCAAACGAGACGACAATGATGGTTGCTTCTTCAAACAGCAAAAGCATGTTGAGTTTGAGGCTGGTTGAATCACAAGGCCACAGCCTTCATGGCGTTATCCATTCAAATGGATTTGGCCATTTGCTTTCTCTCAATGGACTAGCAATGGGCAACACTTTACCTGGCTACCTTCTCATGGACTTTTGGGATCGCTTGTGCAATGCACTCAAAGCAAGGATGGTGAGCTTGAGGGACATTTCACAAAAGAGAGGAATGGAACTAAGGCTACTCCACAGCATTGCATATGGGCAACCATGGTTCAGCCAATGGGGCTACAAATTCAGCCGTGGAGCCTTCAAAGTGAGCATCCAAATGCACCAAAAAGCAATTGAAGCTCTTCAAAACCTCCCTCTTTCTCTCCTTCTCCATCACCTTGCAACTCCCCATCCACACATTCCCTTCATTTTTTCTAAGTACCAATCACTCTCCAATCACCCTCTTCTCACCCTCCAACACCTCTTCCATTTCATGCTCAACCTTAAATCCCCTCTCCACCTCCACACACAAAACTACTCCATTGAATACTCCCATAACTTGCTCGAAACGGCCTCTTGTCGATGGTCCCCGAAGAGAGTTGAAATGGCGGTTCGAGTCATTGTCGAGGCTTTGAAGCGAGCCGAGTTTCGGTGGGTTTCGCGCCAAGAGGTCCGGGATGCTGCCCGTATGTATATTGGCGATACCGGGTTGTTGGATTTCGTGTTGAAGTCGTTGGGAAATCATGTTGTTGGAAATTATTTGGTTCGACGAACGTTGAATCCTGTGACCAAAGTTCTTGAGTATTGCTTGCAGGATGTTTGCAGTAATGTCCAAATGAAACCCAGGTGTAAAGTTGGGAGAGCGGAGTTGGAAAAGGACATCCTCAACCTGTACAAATACATTCTTGGAGACCAAAAGGCATTACGGGCCAAAGGAATTCTTCCCACTCTAACAATGGCTTCCGAGATCATCCTCGACTCGAAGTTCCTCATCAAGGAGTACATCATTGAGCCACAGGCGAAACCCGAGCTGGAAACCGAAGGGAAACTAAACCTCTTGTGCACAGTTAGATTCAAAAGACAAGAAGCAAAAACACTTCCATATGAGTGCATTACATTGAAGAATAATGGCACCATTGATGAGTTAAAGAAGGAGGTGGAAAGGAACTTCAAAGAGATATATTGGGGATTGAGGAGCTTTGTAGTGGAAAGGATAGTGGATTTGGAGGCAAAAGGGAGGGATTTGGTGTTTGGATTAGTGGAAGTTGGTGGGAGGAAGTTGGTGTTTGAAGGAAGTGGAGAAGATGAAGGAAGCTTTAATGGTGGAGGTTTTATGGAGAAGAGAATTTTGGATTGTGTTTGTGGAGCTGTGGAAGATGATGGAGAAAGGATGGTGGCTTGTGATATTTGTGAAATTTGGCAGCACACAAGGTGTGTTCAAATACCAAATGACCAACAACTTCCTCATATATTTATTTGTAATAGTTGTGATCAAGAAATTGCATTGCTACACTCATTGCCTTAG 1899 47.02 MAEVIGRKRRRGGRSGGERVFRFKSFGENGHPAEFVGRFRENVAALLGFGQWESGECGSGLRCWSFRLQVQRQPPFHVVMFVVEELVEAVTPAGRHCKHCQYVGWGHHMICNKKYHFVLPSNETTMMVASSNSKSMLSLRLVESQGHSLHGVIHSNGFGHLLSLNGLAMGNTLPGYLLMDFWDRLCNALKARMVSLRDISQKRGMELRLLHSIAYGQPWFSQWGYKFSRGAFKVSIQMHQKAIEALQNLPLSLLLHHLATPHPHIPFIFSKYQSLSNHPLLTLQHLFHFMLNLKSPLHLHTQNYSIEYSHNLLETASCRWSPKRVEMAVRVIVEALKRAEFRWVSRQEVRDAARMYIGDTGLLDFVLKSLGNHVVGNYLVRRTLNPVTKVLEYCLQDVCSNVQMKPRCKVGRAELEKDILNLYKYILGDQKALRAKGILPTLTMASEIILDSKFLIKEYIIEPQAKPELETEGKLNLLCTVRFKRQEAKTLPYECITLKNNGTIDELKKEVERNFKEIYWGLRSFVVERIVDLEAKGRDLVFGLVEVGGRKLVFEGSGEDEGSFNGGGFMEKRILDCVCGAVEDDGERMVACDICEIWQHTRCVQIPNDQQLPHIFICNSCDQEIALLHSLP 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36687788 36692879 - Tan0011511.1 Tan04g1690 750094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1690 632 ProSitePatterns Zinc finger PHD-type signature. 577 621 IPR019786 -
Tan04g1690 632 Pfam PHD-finger 577 621 IPR019787 -
Tan04g1690 632 SUPERFAMILY FYVE/PHD zinc finger 566 624 IPR011011 -
Tan04g1690 632 SMART PHD_3 576 622 IPR001965 -
Tan04g1690 632 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 568 626 IPR013083 -
Tan04g1690 632 CDD PHD_MMD1_like 576 621 - -
Tan04g1690 632 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 625 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1690 K26271 - - csv:101205960 1031.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0030 Tan-Chr3:3583371 Tan04g1690 Tan-Chr4:36687788 3.90E-50 dispersed
Tan01g2247 Tan-Chr1:26741051 Tan04g1690 Tan-Chr4:36687788 5.80E-94 transposed
Tan03g0029 Tan-Chr3:3583371 Tan04g1690 Tan-Chr4:36687788 2.20E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g555 . . . . . . . . . . . . . . Sed04g3065 . . Bhi07g00146 Tan04g1690 Cmetu08g1955 Lac13g1666 . . . . . . . . . . . Cone19ag0716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009705 1 1 1 0 1 2 1 2 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27264 PF00628 PHD 3.40E-09 CL0390 Tan TR