Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1769 ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTCCGTGAAGAAGCCCAGATGAGACCTCAACAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAATCTAATTCATCGAGTGCTCCACCTGCTCAACCCCAGAAGAAAAAGAGGAACCAACCAGGAACTCCAAATCCAGATGCGGAGGTGATAGCTTTAAGTCCAAAGACGCTAATGGCGACGAACAGATTCATATGCGAAGTATGCAACAAAGGGTTTCAAAGAGAGCAAAATCTACAGCTACACAGAAGAGGACACAATTTGCCTTGGAAGTTAAAGCAAAAAAGCACGAAAGAACCAAAGAGGAAGGTTTATTTATGCCCAGAACCCACATGCGTACATCACGACCCTTCAAGGGCTCTTGGGGACTTAACGGGAATAAAAAAGCACTACTCCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGATAAATGCTCTAAGCGCTACGCCGTTCAGTCGGACTGGAAAGCCCACTCCAAAACCTGTGGCACCCGAGAGTACCGATGCGATTGCGGCACTCTCTTCTCCAGACGGGATAGTTTCATCACCCACAGAGCTTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGGCACCCTTCAAATTTAGGGTCAGCCATTGGAGGCCATTTATATGGAGGTAATAGCAATGTGGGGTTGACATTATCACAAGTTCCTCAAATTTCTTCTCTTCAAGACCATCCCAGCATTACCCAATCAGCCCACGACGTCCTCCGCCTCGGTGGAGGACGTGCCGGGCAGTTCACTCATCTCCTCCCTCCCTCCATTGGCTCGTCCTTCCGACCGCCGCCGCAGCAGGCAATGCCATCGTCCGCTGCAGCGGCATTCTTCTTGAACGACCAGACTAACCCGAATAGCTTCCATGAGGATCATCAAAGCCAATCCCAACAAGGTTTATTTGGAAACAAGGCATTTCATGGGCTAATGCAATTCCCTGATATCCAAAGCCATACAAATAGTAACAACAACAGCAACAACCCTGCCACCAGTCTCTTCAATTTGGGCTTCATTTCAAATCCCACTGGTGATAGTACAACAAATATGAACAGCAACAACACCAACCCTAATAATACCAACAGCAATGGCAGCAACAATACCACCACCAACAACAACAATCTTCAATCCTCTTTGCTAAATCAATTCAGTGGCACAAACAATGGCAACAATGAAGGTGGTGCATCTAACATTTTCTCCGTTAACATAATGGGCGATCAAATCAATTCAGCTACAGTCCCATCTCTCTATAGCAACGCCGGGGGAGTCATCGGCAGCAGTACCGGTGGAGCGATTCCACACATGTCCGCGACGGCACTTCTCCAGAAGGCAGCTCAATTGGGCTCAACAACCTCGAGTAGCAACACTACAGCGACATTGCTGAGAACATTTGGAAGCTCGTCAACCTCGGGCGGGAAGGCATCCGACAGGACGCTTTTCCCGCCAAGCTACGGAGGAGTATTTGGCGAAAACGAGAGCAATCTCCAAGACCTGATGAACTCATTCACGACCGGGAGCTCGGCGGGCGGGCTCTTCGGTGGCGGGATGAGCTCGTTTGGTGGATTTGAGAGTGGAAATAATAGAACCAACATTGAAACATTGGAGGATCCGAAGTTACAACAGAATCTAAGCACAGTAAGCATGGGAGGGACAGATAGGTTAACAAGAGACTTTCTAGGAGTTGGACAGATTGTAAGAAGTATGAGCGGCGGAGGTGGTGGAGGAGGAGGCGGCGGCGGTGGTTATTCCCAGAGAGAACATAAACAAACGCCGCAAGGTATAGTTATGGAGGGAAATGAGAGCAATTCAGCGCCGTCAAGCCAAGCGTTTGGTGGTGGAAATGGAAACTACCAGTGA 1905 48.82 MAASSSSVPLFGVREEAQMRPQQQQQQQQQQQQQSNSSSAPPAQPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPSNLGSAIGGHLYGGNSNVGLTLSQVPQISSLQDHPSITQSAHDVLRLGGGRAGQFTHLLPPSIGSSFRPPPQQAMPSSAAAAFFLNDQTNPNSFHEDHQSQSQQGLFGNKAFHGLMQFPDIQSHTNSNNNSNNPATSLFNLGFISNPTGDSTTNMNSNNTNPNNTNSNGSNNTTTNNNNLQSSLLNQFSGTNNGNNEGGASNIFSVNIMGDQINSATVPSLYSNAGGVIGSSTGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSTSGGKASDRTLFPPSYGGVFGENESNLQDLMNSFTTGSSAGGLFGGGMSSFGGFESGNNRTNIETLEDPKLQQNLSTVSMGGTDRLTRDFLGVGQIVRSMSGGGGGGGGGGGGYSQREHKQTPQGIVMEGNESNSAPSSQAFGGGNGNYQ 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49292463 49297803 + Tan0000645.1 Tan04g1769 750173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1769 634 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Tan04g1769 634 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 151 175 - -
Tan04g1769 634 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 113 147 - -
Tan04g1769 634 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Tan04g1769 634 MobiDBLite consensus disorder prediction 601 634 - -
Tan04g1769 634 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Tan04g1769 634 MobiDBLite consensus disorder prediction 1 61 - -
Tan04g1769 634 Gene3D Classic Zinc Finger 55 124 - -
Tan04g1769 634 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Tan04g1769 634 Gene3D Classic Zinc Finger 130 209 - -
Tan04g1769 634 FunFam protein indeterminate-domain 12-like 55 123 - -
Tan04g1769 634 SMART c2h2final6 117 147 IPR013087 -
Tan04g1769 634 SMART c2h2final6 76 98 IPR013087 -
Tan04g1769 634 SMART c2h2final6 152 172 IPR013087 -
Tan04g1769 634 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 178 213 - -
Tan04g1769 634 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 591 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan04g1769 634 Pfam Zinc-finger of C2H2 type 76 98 IPR013087 -
Tan04g1769 634 MobiDBLite consensus disorder prediction 331 407 - -
Tan04g1769 634 MobiDBLite consensus disorder prediction 581 634 - -
Tan04g1769 634 MobiDBLite consensus disorder prediction 18 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1769 Tan-Chr4:49292463 Tan08g1892 Tan-Chr8:71233370 2.70E-85 dispersed
Tan11g1929 Tan-Chr11:29393639 Tan04g1769 Tan-Chr4:49292463 8.30E-21 wgd
Tan04g1769 Tan-Chr4:49292463 Tan08g1211 Tan-Chr8:32551763 9.30E-17 wgd
Tan04g1769 Tan-Chr4:49292463 Tan08g1211 Tan-Chr8:32551763 9.30E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27270 PF12171 zf-C2H2_jaz 3.90E-05 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1769 K25870 - csv:116401647 927.161