Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1788 ATGGTGAATTCATTCAAGAATTTGCTTCTTTTGTTGCCTTTTTTGGCCATTATTTTTGGCCAAGGCAGGGCCTCTAGGTTAGTTCCCATTATTGATCATAGAGTCGATACTACATGGTACGATGCACGTGCCACCTTCTACGGCGACATGGCCGGTGGCGAAACCATGCAGGGAGCATGCGGGTACGGAAACCTATTCGAGCAAGGGTACGGGCTAGCGACGGCAGCGTTAAGCACAGCGTTGTTCGAGAACGGTGGAGCGTGCGGAGCGTGCTACGAGATAATGTGCATGAATGACACACAACACCAATGGTGCATACCAAACGCAGGCACAATCAAAATAACAGCAACAAACTTCTGCCCACCAAACTACACAAAAACAAATGACATTTGGTGCAACCCACCTCAACGCCACTTCGACCTGTCCCTCTACATGTTCACCAAAATGGCTCCTTATAGGGCTGGTGTCATCCCAGTCCGCTACCGTAGGACACTCTGCCACAAACTCGGCGGACTCAGGTTCCAGCTCAAAGGAAACCCCTATTGGCTTTTGGTTTTGTTGTACAACGTTGCCGGCGCTGGTGATGTTGTTGATGTTAAGATTAAAGGCTCTAGTACTGGAACTTCCCACTGGCTCCAAATGTCCAGGAATTGGGGCCAGAATTGGGTTGTGGATACAGTCCTTGTCGGCCAGACCTTGTCTTTTCAAGTCACTACTAGCGATTGGAGGACGATTCAGTTTGATGATGTTGTGCCCAGCTATTGGCAGTTCGGCCAGACTTTTGAAGGCAAGTATAATTTCTAG 804 48.88 MVNSFKNLLLLLPFLAIIFGQGRASRLVPIIDHRVDTTWYDARATFYGDMAGGETMQGACGYGNLFEQGYGLATAALSTALFENGGACGACYEIMCMNDTQHQWCIPNAGTIKITATNFCPPNYTKTNDIWCNPPQRHFDLSLYMFTKMAPYRAGVIPVRYRRTLCHKLGGLRFQLKGNPYWLLVLLYNVAGAGDVVDVKIKGSSTGTSHWLQMSRNWGQNWVVDTVLVGQTLSFQVTTSDWRTIQFDDVVPSYWQFGQTFEGKYNF 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 52479660 52481248 - Tan0005431.1 Tan04g1788 750192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1788 267 Gene3D - 171 267 IPR036749 -
Tan04g1788 267 SUPERFAMILY Barwin-like endoglucanases 38 189 IPR036908 -
Tan04g1788 267 Gene3D - 29 167 IPR036908 -
Tan04g1788 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 171 IPR007112 -
Tan04g1788 267 PRINTS Expansin signature 112 122 IPR002963 GO:0009664(InterPro)
Tan04g1788 267 PRINTS Expansin signature 98 109 IPR002963 GO:0009664(InterPro)
Tan04g1788 267 PRINTS Expansin signature 69 83 IPR002963 GO:0009664(InterPro)
Tan04g1788 267 PRINTS Expansin signature 146 159 IPR002963 GO:0009664(InterPro)
Tan04g1788 267 PRINTS Expansin signature 129 146 IPR002963 GO:0009664(InterPro)
Tan04g1788 267 PRINTS Expansin signature 170 182 IPR002963 GO:0009664(InterPro)
Tan04g1788 267 PRINTS Expansin signature 220 241 IPR002963 GO:0009664(InterPro)
Tan04g1788 267 PRINTS Expansin signature 249 265 IPR002963 GO:0009664(InterPro)
Tan04g1788 267 SUPERFAMILY PHL pollen allergen 170 263 IPR036749 -
Tan04g1788 267 SMART dpbb_1 74 161 IPR007112 -
Tan04g1788 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 263 IPR007117 -
Tan04g1788 267 CDD DPBB_EXPA_N 39 166 - -
Tan04g1788 267 PANTHER EXPANSIN-A15 21 264 IPR002963 GO:0009664(InterPro)
Tan04g1788 267 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576(InterPro)
Tan04g1788 267 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
Tan04g1788 267 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576(InterPro)
Tan04g1788 267 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576(InterPro)
Tan04g1788 267 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576(InterPro)
Tan04g1788 267 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576(InterPro)
Tan04g1788 267 Pfam Lytic transglycolase 74 161 IPR009009 -
Tan04g1788 267 Pfam Expansin C-terminal domain 173 252 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1788 Tan-Chr4:52479660 Tan05g0412 Tan-Chr5:2890306 9.80E-77 dispersed
Tan04g1815 Tan-Chr4:55227430 Tan04g1788 Tan-Chr4:52479660 9.90E-143 transposed
Tan02g1456 Tan-Chr2:57925973 Tan04g1788 Tan-Chr4:52479660 2.30E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1788 - - - 0.0